Merge branch 'main' of github.com:QUMIA/train-scripts

qumia_core.py

@@ -145,15 +145,21 @@ def validate(trainer: QUMIA_Trainer, n_batches=None, set_type='validation', fold
         print("Possible mismatch between labels and inputs!")
         #raise Exception("Mismatch between labels and inputs")
 
-    # Save the dataframe to a csv file
+    # Prepare the output directory
     val_output_dir = os.path.join(trainer.output_dir, folder)
+    os.makedirs(val_output_dir, exist_ok=True)
+
+    # Save the dataframe to a csv file
     df_combined.to_csv(os.path.join(val_output_dir, f'df_{set_type}_predictions.csv'), index=False)
 
     # Create a confusion matrix
     create_confusion_matrix(rounded_predictions.tolist(), labels.tolist(), set_type, val_output_dir)
 
+    # WandB confusion matrix
+    label_list = [value - 1 for value in labels.astype(int)]
+    pred_list = [value - 1 for value in rounded_predictions.astype(int)]
     wandb.log({"cm_" + folder: wandb.plot.confusion_matrix(probs=None,
-                               y_true=labels, preds=predictions,
+                               y_true=label_list, preds=pred_list,
                                class_names=['1.0', '2.0', '3.0', '4.0'])})
 
     return df_combined