Some simple command updates

RBVI · Mar 18, 2021 · 8dc4ec9 · 8dc4ec9
1 parent 73d2644
commit 8dc4ec9
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Showing 3 changed files with 7 additions and 7 deletions.
diff --git a/src/main/java/edu/ucsf/rbvi/scNetViz/internal/CyActivator.java b/src/main/java/edu/ucsf/rbvi/scNetViz/internal/CyActivator.java
@@ -154,7 +154,7 @@ public void start(BundleContext bc) {
 			props.setProperty(IN_MENU_BAR, "TRUE");
 			props.setProperty(COMMAND_NAMESPACE, "scnetviz");
 			props.setProperty(COMMAND, "calculate tSNE");
-			props.setProperty(COMMAND_DESCRIPTION, "Calculate the tSNE embedding");
+			props.setProperty(COMMAND_DESCRIPTION, "Calculate the tSNE embedding (local)");
 			props.setProperty(COMMAND_LONG_DESCRIPTION, "");
 			props.setProperty(COMMAND_SUPPORTS_JSON, "true");
 			props.setProperty(COMMAND_EXAMPLE_JSON, "{}");
@@ -171,7 +171,7 @@ public void start(BundleContext bc) {
 			props.setProperty(IN_MENU_BAR, "TRUE");
 			props.setProperty(COMMAND_NAMESPACE, "scnetviz");
 			props.setProperty(COMMAND, "calculate UMAP");
-			props.setProperty(COMMAND_DESCRIPTION, "Calculate the UMAP embedding");
+			props.setProperty(COMMAND_DESCRIPTION, "Calculate the UMAP embedding (remote)");
 			props.setProperty(COMMAND_LONG_DESCRIPTION, "");
 			props.setProperty(COMMAND_SUPPORTS_JSON, "true");
 			props.setProperty(COMMAND_EXAMPLE_JSON, "{}");
@@ -235,7 +235,7 @@ public void start(BundleContext bc) {
 			Properties props = new Properties();
 			props.setProperty(COMMAND_NAMESPACE, "scnetviz");
 			props.setProperty(COMMAND, "show cell plot");
-			props.setProperty(COMMAND_DESCRIPTION, "Display the cell plot for a single experiment");
+			props.setProperty(COMMAND_DESCRIPTION, "Display the current cell plot (UMAP, t-SNE) for a single experiment");
 			props.setProperty(COMMAND_LONG_DESCRIPTION, "");
 			props.setProperty(COMMAND_SUPPORTS_JSON, "false");
 			scNVManager.registerService(show, TaskFactory.class, props);
@@ -299,7 +299,7 @@ public void start(BundleContext bc) {
 			Properties props = new Properties();
 			props.setProperty(COMMAND_NAMESPACE, "scnetviz");
 			props.setProperty(COMMAND, "create all");
-			props.setProperty(COMMAND_DESCRIPTION, "Create networks");
+			props.setProperty(COMMAND_DESCRIPTION, "Calculate differential expression and create networks");
 			props.setProperty(COMMAND_LONG_DESCRIPTION, "Use default cluster to calculate differential expression and create networks.");
 			props.setProperty(COMMAND_SUPPORTS_JSON, "true");
 			props.setProperty(COMMAND_EXAMPLE_JSON, "{}");
@@ -311,7 +311,7 @@ public void start(BundleContext bc) {
 			Properties props = new Properties();
 			props.setProperty(COMMAND_NAMESPACE, "scnetviz");
 			props.setProperty(COMMAND, "calculate diffexp");
-			props.setProperty(COMMAND_DESCRIPTION, "Calculate the table of differential expressions");
+			props.setProperty(COMMAND_DESCRIPTION, "Calculate the table of differential gene expression");
 			props.setProperty(COMMAND_LONG_DESCRIPTION, "");
 			props.setProperty(COMMAND_SUPPORTS_JSON, "true");
 			props.setProperty(COMMAND_EXAMPLE_JSON, "{}");

diff --git a/src/main/java/edu/ucsf/rbvi/scNetViz/internal/sources/file/FileSource.java b/src/main/java/edu/ucsf/rbvi/scNetViz/internal/sources/file/FileSource.java
@@ -71,7 +71,7 @@ public FileSource (ScNVManager manager) {
 			props.setProperty(IN_MENU_BAR, "TRUE");
 			props.setProperty(MENU_GRAVITY, "30.0");
 			props.setProperty(COMMAND_NAMESPACE, "scnetviz");
-			props.setProperty(COMMAND_DESCRIPTION, "Load an experiment from a file");
+			props.setProperty(COMMAND_DESCRIPTION, "Load an experiment from a MatrixMarket file");
 			props.setProperty(COMMAND, "load experiment file");
 			scNVManager.registerService(new FileExperimentTaskFactory(manager, this), TaskFactory.class, props);
 		}

diff --git a/src/main/java/edu/ucsf/rbvi/scNetViz/internal/sources/hca/HCASource.java b/src/main/java/edu/ucsf/rbvi/scNetViz/internal/sources/hca/HCASource.java
@@ -86,7 +86,7 @@ public HCASource (ScNVManager manager) {
 		// Register our commands
 		{
 			Properties props = new Properties();
-			props.setProperty(COMMAND_DESCRIPTION, "List all Gene Expression Atlas (HCA) entries available");
+			props.setProperty(COMMAND_DESCRIPTION, "List all Human Cell Atlas (HCA) entries available");
 			props.setProperty(COMMAND_NAMESPACE, "scnetviz");
 			props.setProperty(COMMAND, "list hca entries");
 			props.setProperty(COMMAND_SUPPORTS_JSON, "true");