update Dockerfile and prez tests to use factory pattern

Dockerfile

@@ -52,4 +52,4 @@ RUN apk update && \
 WORKDIR /app
 COPY . .
 
-ENTRYPOINT uvicorn prez.app:app --host=${HOST:-0.0.0.0} --port=${PORT:-8000} --proxy-headers
+ENTRYPOINT uvicorn prez.app:assemble_app --factory --host=${HOST:-0.0.0.0} --port=${PORT:-8000} --proxy-headers

tests/test_count.py

@@ -4,7 +4,7 @@
 from fastapi.testclient import TestClient
 from pyoxigraph.pyoxigraph import Store
 
-from prez.app import app
+from prez.app import assemble_app
 from prez.dependencies import get_repo
 from prez.sparql.methods import Repo, PyoxigraphRepo
 
@@ -32,6 +32,8 @@ def test_client(test_repo: Repo) -> TestClient:
     def override_get_repo():
         return test_repo
 
+    app = assemble_app()
+
     app.dependency_overrides[get_repo] = override_get_repo
 
     with TestClient(app) as c:

tests/test_curie_endpoint.py

@@ -1,11 +1,12 @@
 import pytest
 from fastapi.testclient import TestClient
 
-from prez.app import app
+from prez.app import assemble_app
 
 
 @pytest.fixture
 def client() -> TestClient:
+    app = assemble_app()
     testclient = TestClient(app)
 
     # Make a request for the following IRI to ensure

tests/test_dd_profiles.py

@@ -6,7 +6,7 @@
 from fastapi.testclient import TestClient
 from pyoxigraph.pyoxigraph import Store
 
-from prez.app import app
+from prez.app import assemble_app
 from prez.dependencies import get_repo
 from prez.sparql.methods import Repo, PyoxigraphRepo
 
@@ -34,6 +34,8 @@ def test_client(test_repo: Repo) -> TestClient:
     def override_get_repo():
         return test_repo
 
+    app = assemble_app()
+
     app.dependency_overrides[get_repo] = override_get_repo
 
     with TestClient(app) as c:

tests/test_endpoints_cache.py

@@ -5,7 +5,7 @@
 from pyoxigraph.pyoxigraph import Store
 from rdflib import Graph
 
-from prez.app import app
+from prez.app import assemble_app
 from prez.dependencies import get_repo
 from prez.sparql.methods import Repo, PyoxigraphRepo
 
@@ -33,6 +33,8 @@ def test_client(test_repo: Repo) -> TestClient:
     def override_get_repo():
         return test_repo
 
+    app = assemble_app()
+
     app.dependency_overrides[get_repo] = override_get_repo
 
     with TestClient(app) as c:

tests/test_endpoints_catprez.py

@@ -6,7 +6,7 @@
 from rdflib import Graph, URIRef
 from rdflib.namespace import RDF, DCAT
 
-from prez.app import app
+from prez.app import assemble_app
 from prez.dependencies import get_repo
 from prez.sparql.methods import Repo, PyoxigraphRepo
 
@@ -34,6 +34,8 @@ def client(test_repo: Repo) -> TestClient:
     def override_get_repo():
         return test_repo
 
+    app = assemble_app()
+
     app.dependency_overrides[get_repo] = override_get_repo
 
     with TestClient(app) as c:

tests/test_endpoints_management.py

@@ -5,7 +5,7 @@
 from pyoxigraph.pyoxigraph import Store
 from rdflib import Graph
 
-from prez.app import app
+from prez.app import assemble_app
 from prez.dependencies import get_repo
 from prez.reference_data.prez_ns import PREZ
 from prez.sparql.methods import Repo, PyoxigraphRepo
@@ -34,6 +34,8 @@ def client(test_repo: Repo) -> TestClient:
     def override_get_repo():
         return test_repo
 
+    app = assemble_app()
+
     app.dependency_overrides[get_repo] = override_get_repo
 
     with TestClient(app) as c:

tests/test_endpoints_object.py

@@ -6,7 +6,7 @@
 from rdflib import Graph
 from rdflib import RDF, DCAT
 
-from prez.app import app
+from prez.app import assemble_app
 from prez.dependencies import get_repo
 from prez.sparql.methods import Repo, PyoxigraphRepo
 
@@ -34,6 +34,8 @@ def test_client(test_repo: Repo) -> TestClient:
     def override_get_repo():
         return test_repo
 
+    app = assemble_app()
+
     app.dependency_overrides[get_repo] = override_get_repo
 
     with TestClient(app) as c:

tests/test_endpoints_profiles.py

@@ -6,7 +6,7 @@
 from rdflib import Graph, URIRef
 from rdflib.namespace import RDF, PROF
 
-from prez.app import app
+from prez.app import assemble_app
 from prez.dependencies import get_repo
 from prez.sparql.methods import Repo, PyoxigraphRepo
 
@@ -34,6 +34,8 @@ def client(test_repo: Repo) -> TestClient:
     def override_get_repo():
         return test_repo
 
+    app = assemble_app()
+
     app.dependency_overrides[get_repo] = override_get_repo
 
     with TestClient(app) as c:

tests/test_endpoints_spaceprez.py

@@ -6,7 +6,7 @@
 from rdflib import Graph, URIRef
 from rdflib.namespace import RDF, DCAT, RDFS
 
-from prez.app import app
+from prez.app import assemble_app
 from prez.dependencies import get_repo
 from prez.sparql.methods import Repo, PyoxigraphRepo
 
@@ -34,6 +34,8 @@ def client(test_repo: Repo) -> TestClient:
     def override_get_repo():
         return test_repo
 
+    app = assemble_app()
+
     app.dependency_overrides[get_repo] = override_get_repo
 
     with TestClient(app) as c:

tests/test_endpoints_vocprez.py

@@ -6,7 +6,7 @@
 from rdflib import Graph, URIRef
 from rdflib.compare import isomorphic
 
-from prez.app import app
+from prez.app import assemble_app
 from prez.dependencies import get_repo
 from prez.sparql.methods import Repo, PyoxigraphRepo
 
@@ -34,6 +34,8 @@ def test_client(test_repo: Repo) -> TestClient:
     def override_get_repo():
         return test_repo
 
+    app = assemble_app()
+
     app.dependency_overrides[get_repo] = override_get_repo
 
     with TestClient(app) as c:

tests/test_redirect_endpoint.py

@@ -4,7 +4,7 @@
 from fastapi.testclient import TestClient
 from pyoxigraph.pyoxigraph import Store
 
-from prez.app import app
+from prez.app import assemble_app
 from prez.dependencies import get_repo
 from prez.sparql.methods import Repo, PyoxigraphRepo
 
@@ -32,6 +32,8 @@ def test_client(test_repo: Repo) -> TestClient:
     def override_get_repo():
         return test_repo
 
+    app = assemble_app()
+
     app.dependency_overrides[get_repo] = override_get_repo
 
     with TestClient(app) as c:

tests/test_search.py

@@ -7,7 +7,7 @@
 from rdflib import Literal, URIRef, Graph
 from rdflib.compare import isomorphic
 
-from prez.app import app
+from prez.app import assemble_app
 from prez.dependencies import get_repo
 from prez.models.search_method import SearchMethod
 from prez.routers.search import extract_qsa_params
@@ -37,6 +37,8 @@ def client(test_repo: Repo) -> TestClient:
     def override_get_repo():
         return test_repo
 
+    app = assemble_app()
+
     app.dependency_overrides[get_repo] = override_get_repo
 
     with TestClient(app) as c:

tests/test_sparql.py

@@ -4,7 +4,7 @@
 from fastapi.testclient import TestClient
 from pyoxigraph.pyoxigraph import Store
 
-from prez.app import app
+from prez.app import assemble_app
 from prez.dependencies import get_repo
 from prez.sparql.methods import Repo, PyoxigraphRepo
 
@@ -32,6 +32,8 @@ def client(test_repo: Repo) -> TestClient:
     def override_get_repo():
         return test_repo
 
+    app = assemble_app()
+
     app.dependency_overrides[get_repo] = override_get_repo
 
     with TestClient(app) as c:
@@ -43,15 +45,23 @@ def override_get_repo():
 
 def test_select(client):
     """check that a valid select query returns a 200 response."""
-    r = client.get("/sparql?query=SELECT%20*%0AWHERE%20%7B%0A%20%20%3Fs%20%3Fp%20%3Fo%0A%7D%20LIMIT%201")
+    r = client.get(
+        "/sparql?query=SELECT%20*%0AWHERE%20%7B%0A%20%20%3Fs%20%3Fp%20%3Fo%0A%7D%20LIMIT%201"
+    )
     assert (r.status_code, 200)
 
+
 def test_construct(client):
     """check that a valid construct query returns a 200 response."""
-    r = client.get("/sparql?query=CONSTRUCT%20%7B%0A%20%20%3Fs%20%3Fp%20%3Fo%0A%7D%20WHERE%20%7B%0A%20%20%3Fs%20%3Fp%20%3Fo%0A%7D%20LIMIT%201")
+    r = client.get(
+        "/sparql?query=CONSTRUCT%20%7B%0A%20%20%3Fs%20%3Fp%20%3Fo%0A%7D%20WHERE%20%7B%0A%20%20%3Fs%20%3Fp%20%3Fo%0A%7D%20LIMIT%201"
+    )
     assert (r.status_code, 200)
 
+
 def test_ask(client):
     """check that a valid ask query returns a 200 response."""
-    r = client.get("/sparql?query=PREFIX%20ex%3A%20%3Chttp%3A%2F%2Fexample.com%2Fdatasets%2F%3E%0APREFIX%20dcterms%3A%20%3Chttp%3A%2F%2Fpurl.org%2Fdc%2Fterms%2F%3E%0A%0AASK%0AWHERE%20%7B%0A%20%20%3Fsubject%20dcterms%3Atitle%20%3Ftitle%20.%0A%20%20FILTER%20CONTAINS(LCASE(%3Ftitle)%2C%20%22sandgate%22)%0A%7D")
+    r = client.get(
+        "/sparql?query=PREFIX%20ex%3A%20%3Chttp%3A%2F%2Fexample.com%2Fdatasets%2F%3E%0APREFIX%20dcterms%3A%20%3Chttp%3A%2F%2Fpurl.org%2Fdc%2Fterms%2F%3E%0A%0AASK%0AWHERE%20%7B%0A%20%20%3Fsubject%20dcterms%3Atitle%20%3Ftitle%20.%0A%20%20FILTER%20CONTAINS(LCASE(%3Ftitle)%2C%20%22sandgate%22)%0A%7D"
+    )
     assert (r.status_code, 200)