draft ggplot based sankey plot #18
Workflow file for this run
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| # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | |
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
| on: | |
| push: | |
| branches: [main, master] | |
| pull_request: | |
| branches: [main, master] | |
| name: R-CMD-check-CRAN-incoming.yaml | |
| permissions: | |
| pull-requests: write | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ${{ matrix.config.os }} | |
| timeout-minutes: 25 | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: windows-latest, r: 'devel'} | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_KEEP_PKG_SOURCE: yes | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| http-user-agent: ${{ matrix.config.http-user-agent }} | |
| use-public-rspm: true | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: any::rcmdcheck, any::crayon, any::xml2 | |
| needs: check | |
| - name: Install aspell on Windows | |
| if: ${{ runner.os=='Windows' }} | |
| run: | | |
| pacman -S --noconfirm aspell aspell-en | |
| - name: Install aspell on Ubuntu | |
| if: ${{ runner.os=='Linux' }} | |
| run: | | |
| sudo apt-get update && sudo apt-get install -y aspell aspell-en | |
| - name: Install aspell on macOS | |
| if: ${{ runner.os=='macOS' }} | |
| run: | | |
| brew install aspell | |
| - name: R CMD check CRAN incoming feasibilty | |
| id: rcmdcheck | |
| run: | | |
| cat("::group::Run R CMD check with CRAN incoming env vars\n") | |
| options(crayon.enabled = TRUE) | |
| cat("LOGNAME=", Sys.info()[["user"]], "\n", sep = "", file = Sys.getenv("GITHUB_ENV"), append = TRUE) | |
| Sys.setenv("_R_CHECK_FORCE_SUGGESTS_" = "false") | |
| Sys.setenv("_R_CHECK_CRAN_INCOMING_" = "true") | |
| Sys.setenv("_R_CHECK_CRAN_INCOMING_REMOTE_" = "true") | |
| Sys.setenv("_R_CHECK_CRAN_INCOMING_USE_ASPELL_" = "true") | |
| cat("check-dir-path=", file.path(getwd(), "check"), "\n", file = Sys.getenv("GITHUB_OUTPUT"), sep = "", append = TRUE) | |
| check_results <- rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), build_args = c("--no-manual", "--compact-vignettes=gs+qpdf"), error_on = "warning", check_dir = "check") | |
| writeLines(paste0("```\n", check_results$stdout, "\n```"), Sys.getenv("GITHUB_STEP_SUMMARY")) | |
| notes <- unlist(strsplit(check_results$notes, "\\n")) | |
| notes <- grep("^checking CRAN incoming feasibility|^Maintainer: |^New submission$|^Version contains large components |^$", notes, value = TRUE, invert = TRUE) | |
| writeLines(paste0("R CMD check CRAN incoming feasibility check notes found:\n```\n", paste(notes, collapse = "\n"), "\n```"), "notes.md") | |
| if (length(notes) > 0L) { cat("::error::Notes found in CRAN incoming feasibility check\n"); cat(paste(notes, collapse = "\n")); quit(status=1) } | |
| shell: Rscript {0} | |
| - name: Upload 00check.log | |
| if: failure() | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: ${{ format('{0}-{1}-r{2}-{3}-00check.log', runner.os, runner.arch, matrix.config.r, matrix.config.id || strategy.job-index ) }} | |
| path: ${{ steps.rcmdcheck.outputs.check-dir-path }}/*.Rcheck/00check.log | |
| if-no-files-found: ignore | |
| - name: Find Comment | |
| if: failure() | |
| uses: peter-evans/find-comment@v3 | |
| id: fc | |
| with: | |
| issue-number: ${{ github.event.pull_request.number }} | |
| comment-author: 'github-actions[bot]' | |
| - name: Create or update comment | |
| if: failure() | |
| uses: peter-evans/create-or-update-comment@v4 | |
| with: | |
| comment-id: ${{ steps.fc.outputs.comment-id }} | |
| issue-number: ${{ github.event.pull_request.number }} | |
| body-path: "notes.md" | |
| edit-mode: replace |