Added READMEs and finalized the figure scripts

RPGroup-PBoC · Oct 15, 2020 · 5833cfb · 5833cfb
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diff --git a/code/figures/README.md b/code/figures/README.md
@@ -1,3 +1,4 @@
 ## `figures`
 
-All scripts used to generate formal publication figures are stored here. 
+All scripts used to generate formal publication figures are stored here. These scripts 
+are designed to be executed from this directory. Note that the `prot` module must be installed.
diff --git a/code/figures/complex_explorer/README.md b/code/figures/complex_explorer/README.md
@@ -0,0 +1,10 @@
+# `complex_explorer`
+This directory contains the code used to generate the [data explorer](https://rpgroup.caltech.edu/data_explorer) interactive figure. The contents are as follows:
+
+
+*  `complex_explorer.py` generates the actual figure. 
+*  `COG_selector.js` provides interactivity for filtering the complexes by their secondary COG category. 
+*  `complex_selector.js` and `protein_selector.js` provide interactivity for selecting complexes or individual proteins, respectively. 
+*  `complex_annotations.csv` is a data file which acts as a look up table of complex to the secondary COG category.  
+*  `complexes_compressed.csv` and `proteins_compressed.csv` are the data sources for the complex and protein explorers, respectively. They are processed in a way that makes plotting easy. 
+*  `explorer_munging.py` loads in the raw data and generates the two `csv` files described above. 
diff --git a/code/figures/fig9c_rRNA_scaling_nb.py → code/figures/fig10c_rRNA_scaling.py b/code/figures/fig9c_rRNA_scaling_nb.py → code/figures/fig10c_rRNA_scaling.py
diff --git a/code/figures/fig10d_boxcar.py b/code/figures/fig10d_boxcar.py
diff --git a/code/figures/fig10d_gaussian.py b/code/figures/fig10d_gaussian.py