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Update expected test results for default value change.
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@Lenbok
Lenbok committed Oct 29, 2018
1 parent 444e9e7 commit 865c8a2
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Showing 6 changed files with 12 additions and 12 deletions.
2 changes: 1 addition & 1 deletion test/com/rtg/variant/cnv/segment/resources/expected.segments-gc.vcf
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##FORMAT=<ID=LR,Number=1,Type=Float,Description="Log2 of RD ratio with respect to control">
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT foo
simulatedSequence1 1752 . C . . . END=4944;IMPRECISE;CIPOS=-1752,502;CIEND=-505,25;BC=3 GT:LR:RDR:SQS 0:0.0000:1.0000:0.0000
simulatedSequence1 4969 . G <DEL> . . SVTYPE=DEL;END=6352;IMPRECISE;CIPOS=-25,505;CIEND=-8,3;BC=3 GT:LR:RDR:SQS 1:-8.3808:0.0030:8.3808
simulatedSequence1 4969 . G <DEL> . . SVTYPE=DEL;END=6352;IMPRECISE;CIPOS=-25,505;CIEND=-8,3;BC=3 GT:LR:RDR:SQS 1:-6.0000:0.0156:6.0000
simulatedSequence1 6355 . G . . . END=8415;IMPRECISE;CIPOS=-3,92;CIEND=-55,13;BC=9 GT:LR:RDR:SQS 0:0.0000:1.0000:0.0000
simulatedSequence1 8428 . A <DUP> . . SVTYPE=DUP;END=9219;IMPRECISE;CIPOS=-13,8;CIEND=-308,781;BC=2 GT:LR:RDR:SQS 1:1.5850:3.0000:1.5850
2 changes: 1 addition & 1 deletion test/com/rtg/variant/cnv/segment/resources/expected.segments-panel.vcf
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Original file line number Diff line number Diff line change
Expand Up @@ -19,6 +19,6 @@
##FORMAT=<ID=LR,Number=1,Type=Float,Description="Log2 of RD ratio with respect to control">
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT foo
simulatedSequence1 1752 . C . . . END=4944;IMPRECISE;CIPOS=-1752,502;CIEND=-505,25;BC=3 GT:LR:RDR:SQS 0:0.0000:1.0000:0.0000
simulatedSequence1 4969 . G <DEL> . . SVTYPE=DEL;END=6352;IMPRECISE;CIPOS=-25,505;CIEND=-8,3;BC=3 GT:LR:RDR:SQS 1:-8.3808:0.0030:8.3808
simulatedSequence1 4969 . G <DEL> . . SVTYPE=DEL;END=6352;IMPRECISE;CIPOS=-25,505;CIEND=-8,3;BC=3 GT:LR:RDR:SQS 1:-6.0000:0.0156:6.0000
simulatedSequence1 6355 . G . . . END=8415;IMPRECISE;CIPOS=-3,92;CIEND=-55,13;BC=9 GT:LR:RDR:SQS 0:0.0000:1.0000:0.0000
simulatedSequence1 8428 . A <DUP> . . SVTYPE=DUP;END=9219;IMPRECISE;CIPOS=-13,8;CIEND=-308,781;BC=2 GT:LR:RDR:SQS 1:1.5850:3.0000:1.5850
2 changes: 1 addition & 1 deletion test/com/rtg/variant/cnv/segment/resources/expected.segments.vcf
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Original file line number Diff line number Diff line change
Expand Up @@ -19,6 +19,6 @@
##FORMAT=<ID=LR,Number=1,Type=Float,Description="Log2 of RD ratio with respect to control">
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT foo
simulatedSequence1 1752 . C . . . END=4944;IMPRECISE;CIPOS=-1752,502;CIEND=-505,25;BC=3 GT:LR:RDR:SQS 0:0.0000:1.0000:0.0000
simulatedSequence1 4969 . G <DEL> . . SVTYPE=DEL;END=6352;IMPRECISE;CIPOS=-25,505;CIEND=-8,3;BC=3 GT:LR:RDR:SQS 1:-8.3808:0.0030:8.3808
simulatedSequence1 4969 . G <DEL> . . SVTYPE=DEL;END=6352;IMPRECISE;CIPOS=-25,505;CIEND=-8,3;BC=3 GT:LR:RDR:SQS 1:-6.0000:0.0156:6.0000
simulatedSequence1 6355 . G . . . END=8415;IMPRECISE;CIPOS=-3,92;CIEND=-55,13;BC=9 GT:LR:RDR:SQS 0:0.0000:1.0000:0.0000
simulatedSequence1 8428 . A <DUP> . . SVTYPE=DUP;END=9219;IMPRECISE;CIPOS=-13,8;CIEND=-308,781;BC=2 GT:LR:RDR:SQS 1:1.5850:3.0000:1.5850
6 changes: 3 additions & 3 deletions test/com/rtg/variant/cnv/segment/resources/expected.unsegmented-gc.bed
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Original file line number Diff line number Diff line change
Expand Up @@ -2,9 +2,9 @@
simulatedSequence1 1752 2757 2000.00 2000.00 496 0.493532 2000.00 2000.00 1.00000 1.00000 1.00000 0.00000
simulatedSequence1 2822 3835 2000.00 2000.00 531 0.524186 2000.00 2000.00 1.00000 1.00000 1.00000 0.00000
simulatedSequence1 3933 4944 2000.00 2000.00 525 0.519288 2000.00 2000.00 1.00000 1.00000 1.00000 0.00000
simulatedSequence1 4969 5980 6.00000 2000.00 508 0.502473 6.00000 2000.00 0.00300000 1.00000 0.00300000 -8.38082
simulatedSequence1 6289 6298 6.00000 2000.00 6 0.666667 6.00000 2000.00 0.00300000 1.00000 0.00300000 -8.38082
simulatedSequence1 6335 6352 6.00000 2000.00 9 0.529412 6.00000 2000.00 0.00300000 1.00000 0.00300000 -8.38082
simulatedSequence1 4969 5980 6.00000 2000.00 508 0.502473 6.00000 2000.00 0.00300000 1.00000 0.00300000 -6.00000
simulatedSequence1 6289 6298 6.00000 2000.00 6 0.666667 6.00000 2000.00 0.00300000 1.00000 0.00300000 -6.00000
simulatedSequence1 6335 6352 6.00000 2000.00 9 0.529412 6.00000 2000.00 0.00300000 1.00000 0.00300000 -6.00000
simulatedSequence1 6355 6540 2000.00 2000.00 96 0.518919 2000.00 2000.00 1.00000 1.00000 1.00000 0.00000
simulatedSequence1 6655 6740 2000.00 2000.00 51 0.600000 2000.00 2000.00 1.00000 1.00000 1.00000 0.00000
simulatedSequence1 6755 6940 2000.00 2000.00 86 0.464865 2000.00 2000.00 1.00000 1.00000 1.00000 0.00000
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6 changes: 3 additions & 3 deletions test/com/rtg/variant/cnv/segment/resources/expected.unsegmented-panel.bed
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Original file line number Diff line number Diff line change
Expand Up @@ -2,9 +2,9 @@
simulatedSequence1 1752 2757 2000.00 1.00000 1.00000 1.00000 0.00000
simulatedSequence1 2822 3835 2000.00 1.00000 1.00000 1.00000 0.00000
simulatedSequence1 3933 4944 2000.00 1.00000 1.00000 1.00000 0.00000
simulatedSequence1 4969 5980 6.00000 1.00000 0.00300000 0.00300000 -8.38082
simulatedSequence1 6289 6298 6.00000 1.00000 0.00300000 0.00300000 -8.38082
simulatedSequence1 6335 6352 6.00000 1.00000 0.00300000 0.00300000 -8.38082
simulatedSequence1 4969 5980 6.00000 1.00000 0.00300000 0.00300000 -6.00000
simulatedSequence1 6289 6298 6.00000 1.00000 0.00300000 0.00300000 -6.00000
simulatedSequence1 6335 6352 6.00000 1.00000 0.00300000 0.00300000 -6.00000
simulatedSequence1 6355 6540 2000.00 1.00000 1.00000 1.00000 0.00000
simulatedSequence1 6655 6740 2000.00 1.00000 1.00000 1.00000 0.00000
simulatedSequence1 6755 6940 2000.00 1.00000 1.00000 1.00000 0.00000
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6 changes: 3 additions & 3 deletions test/com/rtg/variant/cnv/segment/resources/expected.unsegmented.bed
View file
Original file line number Diff line number Diff line change
Expand Up @@ -2,9 +2,9 @@
simulatedSequence1 1752 2757 2000.00 2000.00 1.00000 1.00000 1.00000 0.00000
simulatedSequence1 2822 3835 2000.00 2000.00 1.00000 1.00000 1.00000 0.00000
simulatedSequence1 3933 4944 2000.00 2000.00 1.00000 1.00000 1.00000 0.00000
simulatedSequence1 4969 5980 6.00000 2000.00 0.00300000 1.00000 0.00300000 -8.38082
simulatedSequence1 6289 6298 6.00000 2000.00 0.00300000 1.00000 0.00300000 -8.38082
simulatedSequence1 6335 6352 6.00000 2000.00 0.00300000 1.00000 0.00300000 -8.38082
simulatedSequence1 4969 5980 6.00000 2000.00 0.00300000 1.00000 0.00300000 -6.00000
simulatedSequence1 6289 6298 6.00000 2000.00 0.00300000 1.00000 0.00300000 -6.00000
simulatedSequence1 6335 6352 6.00000 2000.00 0.00300000 1.00000 0.00300000 -6.00000
simulatedSequence1 6355 6540 2000.00 2000.00 1.00000 1.00000 1.00000 0.00000
simulatedSequence1 6655 6740 2000.00 2000.00 1.00000 1.00000 1.00000 0.00000
simulatedSequence1 6755 6940 2000.00 2000.00 1.00000 1.00000 1.00000 0.00000
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