- Add support for selecting
hap1
,hap2
as HiFiasm output - Add support for selecting multiple HiFiasm outputs to use
- Add support for selecting
a_ctg
as HiFiasm output - Add option
hifiasm-write-ec
, to set the--write-ec
option in HiFiasm - Include regions from the assembly that overlap, but do not match, the gene of interest
- Add separate bam file output for mapped/unmapped contigs
- Add support for selecting HiFiasm output to use via the
hifiasm-output
setting - Add sample name as prefix to per-gene contigs fasta files
Full Changelog: v0.2...v0.3