Basic Digital Image Acquisition, Design, Processing, Analysis, Management, and Presentation - datasets and code

This repository contains protocols and links to data sets used in:

D’Antuono, R. (2022). Basic Digital Image Acquisition, Design, Processing, Analysis, Management, and Presentation. In: Nechyporuk-Zloy, V. (eds) Principles of Light Microscopy: From Basic to Advanced . Springer, Cham. https://doi.org/10.1007/978-3-031-04477-9_4

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Table 4.2

- 3D_rendering_in_napari.ipynb

- Image data: https://doi.org/10.5281/zenodo.8222707

3D rendering in napari
Fig. 4.9 of D’Antuono, R. (2022). Basic Digital Image Acquisition, Design, Processing, Analysis, Management, and Presentation. In: Nechyporuk-Zloy, V. (eds) Principles of Light Microscopy: From Basic to Advanced . Springer, Cham. https://doi.org/10.1007/978-3-031-04477-9_4

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Protocol 4.4.C: Use Coding to Count and Measure Cells—Level: Advanced

- Count_and_Measure_cells_python.ipynb

- Image data: https://doi.org/10.5281/zenodo.8228041

Count and measure cells with python
Fig. 4.11 of D’Antuono, R. (2022). Basic Digital Image Acquisition, Design, Processing, Analysis, Management, and Presentation. In: Nechyporuk-Zloy, V. (eds) Principles of Light Microscopy: From Basic to Advanced . Springer, Cham. https://doi.org/10.1007/978-3-031-04477-9_4