changed to 0.5.2

RodrigoZepeda · Jul 25, 2024 · 3cf2401 · 3cf2401
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diff --git a/.Rbuildignore b/.Rbuildignore
@@ -8,3 +8,5 @@
 ^codecov\.yml$
 ^\.github$
 ^vignettes/articles$
+^_pkgdown\.yml
+^\.Rhistory
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,6 +1,6 @@
 Package: WHOicd
 Title: Retrieve data from the World Health Organization (WHO) International Classification of Diseases (ICD) API version 2
-Version: 0.5.1
+Version: 0.5.2
 Authors@R: 
     person("Rodrigo", "Zepeda-Tello", , "rzepeda17@gmail.com", role = c("aut", "cre"),
            comment = c(ORCID = "0000-0003-4471-5270"))

diff --git a/NEWS.md b/NEWS.md
@@ -1,3 +1,9 @@
+# WHOicd 0.5.2
+
+* Added the site links to `DESCRIPTION`.
+* Changed website version to bootstrap v5.
+* Removed history from package.
+
 # WHOicd 0.5.1
 
 * Stopped exporting functions to `code_place` and `code_maternal`.

diff --git a/README.Rmd b/README.Rmd
@@ -56,15 +56,15 @@ token <- get_token(CLIENT_ID, CLIENT_SECRET)
 
 There are three main objectives for this package:
 
-1. Use of the DORIS system to obtain underlying cause of death.
+1. Use of the DORIS system to obtain underlying cause of death from death certificate information.
 2. [Use of ICD-11 to codify causes of death](https://rodrigozepeda.github.io/WHOicd/articles/ICD-11.html).
 3. [Use of ICD-10 to search for causes of death](https://rodrigozepeda.github.io/WHOicd/articles/ICD-10.html).
 
 ## DORIS (WHO Digital Open Rule Integrated Cause of Death Selection)
 
 The [Digital Open Rule Integrated Cause of Death Selection](https://icd.who.int/doris/en), DORIS, 
 provides a framework for obtaining the underlying cause of death from a death certificate. DORIS
-functionality has been implemented in the `doris` function. 
+functionality has been implemented in the `doris()` function. 
 
 The following example considers a 60 year old female whose primary cause of death was `2D42`: 
 `Malignant neoplasms of ill-defined sites` due to `2E03`: `Malignant neoplasm metastasis in bone or bone marrow` due to `CB41.0Z`: `Acute respiratory failure, unspecified`. 
@@ -108,19 +108,32 @@ Additional information on ICD-11 can be found in the [ICD-11 article](https://ro
 The main function relating to ICD-10 is `icd10_search()` which searches for the titles and parents of codes, blocks of chapters. As an example, we can search for the following vector and obtain a `data.frame`: 
 
 ```{r}
+#| results: false
 #Search for code, specific code, chapter and block 
 codes <- c("D60", "IX", "I10-I15")
 icd10_search(token, codes)
 ```
 
+```{r}
+#| echo: false
+icd10_search(token, codes) |> tibble::as_tibble()
+```
+
 If you only want to get the title of the current code/chapter/block you can use `icd10_title` which is faster as it requires less requests to the API:
 
 ```{r}
+#| results: false
 #Search for code, specific code, chapter and block 
 codes <- c("D60", "IX", "I10-I15")
 icd10_title(token, codes)
 ```
 
+```{r}
+#| echo: false
+#Search for code, specific code, chapter and block 
+icd10_title(token, codes) |> tibble::as_tibble()
+```
+
 Additional information on ICD-10 can be found in the [ICD-10 article](https://rodrigozepeda.github.io/WHOicd/articles/ICD-10.html)
 
 ## Support

diff --git a/README.md b/README.md
@@ -52,7 +52,8 @@ token <- get_token(CLIENT_ID, CLIENT_SECRET)
 
 There are three main objectives for this package:
 
-1.  Use of the DORIS system to obtain underlying cause of death.
+1.  Use of the DORIS system to obtain underlying cause of death from
+    death certificate information.
 2.  [Use of ICD-11 to codify causes of
     death](https://rodrigozepeda.github.io/WHOicd/articles/ICD-11.html).
 3.  [Use of ICD-10 to search for causes of
@@ -63,7 +64,7 @@ There are three main objectives for this package:
 The [Digital Open Rule Integrated Cause of Death
 Selection](https://icd.who.int/doris/en), DORIS, provides a framework
 for obtaining the underlying cause of death from a death certificate.
-DORIS functionality has been implemented in the `doris` function.
+DORIS functionality has been implemented in the `doris()` function.
 
 The following example considers a 60 year old female whose primary cause
 of death was `2D42`: `Malignant neoplasms of ill-defined sites` due to
@@ -152,20 +153,15 @@ we can search for the following vector and obtain a `data.frame`:
 #Search for code, specific code, chapter and block 
 codes <- c("D60", "IX", "I10-I15")
 icd10_search(token, codes)
-#>   searched code                                          code_title   block
-#> 1      D60  D60 Acquired pure red cell aplasia [erythroblastopenia] D60-D64
-#> 2       IX <NA>                                                <NA>    <NA>
-#> 3  I10-I15 <NA>                                                <NA> I10-I15
-#>                   block_title chapter
-#> 1 Aplastic and other anaemias     III
-#> 2                        <NA>      IX
-#> 3       Hypertensive diseases      IX
-#>                                                                                         chapter_title
-#> 1 Diseases of the blood and blood-forming organs and certain disorders involving the immune mechanism
-#> 2                                                                  Diseases of the circulatory system
-#> 3                                                                  Diseases of the circulatory system
 ```
 
+    #> # A tibble: 3 × 7
+    #>   searched code  code_title              block block_title chapter chapter_title
+    #>   <chr>    <chr> <chr>                   <chr> <chr>       <chr>   <chr>        
+    #> 1 D60      D60   Acquired pure red cell… D60-… Aplastic a… III     Diseases of …
+    #> 2 IX       <NA>  <NA>                    <NA>  <NA>        IX      Diseases of …
+    #> 3 I10-I15  <NA>  <NA>                    I10-… Hypertensi… IX      Diseases of …
+
 If you only want to get the title of the current code/chapter/block you
 can use `icd10_title` which is faster as it requires less requests to
 the API:
@@ -174,12 +170,15 @@ the API:
 #Search for code, specific code, chapter and block 
 codes <- c("D60", "IX", "I10-I15")
 icd10_title(token, codes)
-#>   searched                                               title
-#> 1      D60 Acquired pure red cell aplasia [erythroblastopenia]
-#> 2       IX                  Diseases of the circulatory system
-#> 3  I10-I15                               Hypertensive diseases
 ```
 
+    #> # A tibble: 3 × 2
+    #>   searched title                                              
+    #>   <chr>    <chr>                                              
+    #> 1 D60      Acquired pure red cell aplasia [erythroblastopenia]
+    #> 2 IX       Diseases of the circulatory system                 
+    #> 3 I10-I15  Hypertensive diseases
+
 Additional information on ICD-10 can be found in the [ICD-10
 article](https://rodrigozepeda.github.io/WHOicd/articles/ICD-10.html)
 

diff --git a/docs/404.html b/docs/404.html
diff --git a/docs/LICENSE-text.html b/docs/LICENSE-text.html
diff --git a/docs/LICENSE.html b/docs/LICENSE.html
diff --git a/docs/articles/Generating-your-token.html b/docs/articles/Generating-your-token.html
diff --git a/docs/articles/ICD-10.html b/docs/articles/ICD-10.html
diff --git a/docs/articles/ICD-11.html b/docs/articles/ICD-11.html
diff --git a/docs/articles/index.html b/docs/articles/index.html
diff --git a/docs/authors.html b/docs/authors.html