changes to hardcoded subject names in a few scripts

+light_capture/get_all_cone_locations.m

@@ -1,10 +1,10 @@
 function locs = get_all_cone_locations(subject)
     if nargin < 1
-        subject = '10001';
+        subject = '10001R';
     end
 
     % get location of all cones
-    dat = load(['dat/' subject '/LMS_cones.mat']);
+    dat = load(['+cone_mosaic/dat/' subject '/LMS_cones.mat']);
     fnames = fieldnames(dat); %LMS_cones_10001R;
     locs = dat.(fnames{1}); 
 

+light_capture/mosaic_analysis.m

@@ -1,6 +1,6 @@
-subject = '20076';
+subject = '20076R';
 
-cones = get_all_cone_locations(subject);
+cones = light_capture.get_all_cone_locations(subject);
 figure;
 plot(cones(:, 1), cones(:, 2), 'k+')
 
@@ -20,7 +20,7 @@
 mean(mean(dist(:, 2:7)))
 
 % get the cones from a subject
-cones = get_all_cone_locations('10001');
+cones = light_capture.get_all_cone_locations(subject);
 % select out a center cone of interest
 c_ind = 107;
 x_mean = cones(c_ind, 1);

.gitignore

@@ -1,4 +1,4 @@
-*~
-*.asv
-unittests/dat/blood_vessel/*.tif
-*.json
+*~
+*.asv
+unittests/dat/blood_vessel/*.tif
+*.json

.gitmodules

@@ -1,3 +1,3 @@
-[submodule "export_fig"]
-	path = libs/export_fig
-	url = https://github.com/altmany/export_fig
+[submodule "export_fig"]
+	path = libs/export_fig
+	url = https://github.com/altmany/export_fig