Check insertion and deletion blast files #13

elcortegano · 2021-03-25T23:14:20Z

In many instances, no deletions or insertions are present in blast files, resulting in errors reported by cat and rm. For example:

cat: test.deletion_blast: No such file or directory
rm: cannot remove 'ref_segment.fa': No such file or directory
rm: cannot remove 'temp.blast2': No such file or directory

Now, insertion and deletion blast files are only sorted (and later removed) when they exist.

In many instances, no deletions or insertions are present in blast files, resulting in errors reported by `cat` and `rm`. Not insertion and deletion blast files are only sorted (and later removed) when they exist.

The END block of `awk` does not check whether the NR variable is NULL or not, which sometimes results in "fatal: division by zero attempted" errors. The code changes prevent this error.

elcortegano added 2 commits March 25, 2021 22:58

Check insertion and deletion blast files

5a8b658

In many instances, no deletions or insertions are present in blast files, resulting in errors reported by `cat` and `rm`. Not insertion and deletion blast files are only sorted (and later removed) when they exist.

awk only divides when NR is not NULL

a5b9382

The END block of `awk` does not check whether the NR variable is NULL or not, which sometimes results in "fatal: division by zero attempted" errors. The code changes prevent this error.

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Check insertion and deletion blast files #13

Check insertion and deletion blast files #13

elcortegano commented Mar 25, 2021

Check insertion and deletion blast files #13

Are you sure you want to change the base?

Check insertion and deletion blast files #13

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elcortegano commented Mar 25, 2021