Add Github Action for testing #1
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| --- | |
| name: cosmo | |
| on: push | |
| jobs: | |
| create-env: | |
| name: cosmo-python | |
| runs-on: ${{ ubuntu-latest }} | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: checkout repository | |
| uses: actions/checkout@v2 | |
| - name: create environment with mamba | |
| uses: conda-incubator/setup-miniconda2 | |
| with: | |
| mamba-version: "*" | |
| channels: conda-forge,bioconda,defaults | |
| auto-activate-base: false | |
| activate-environment: cosmo | |
| environment_file: .github/workflows/test_environment.yml | |
| - name: run tests | |
| run: | | |
| python -m pytest |