Add install test #7
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| name: cosmo | |
| on: [push] | |
| jobs: | |
| create-env: | |
| name: cosmo-python | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: checkout repository | |
| uses: actions/checkout@v2 | |
| - name: create environment with mamba | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| mamba-version: "*" | |
| channels: conda-forge,bioconda,defaults | |
| auto-activate-base: false | |
| activate-environment: cosmo | |
| environment-file: test/test_environment.yml | |
| - name: run tests | |
| run: | | |
| python -m pytest | |
| - name: install and test | |
| run: | | |
| pip install -e . | |
| COSMO --help |