Release Version 0.4.0 · SBU-BMI/wsinfer

Welcome to WSInfer version 0.4.0! This version has several important changes, including:

Licensing WSInfer under Apache 2.0
Using a new tissue segmentation algorithm (for this reason, outputs from this release may differ from outputs of previous releases, even though models remain unchanged)
the use of torchscript models hosted on HuggingFace Model Hub. users can supply local torchscript models. we have discontinued the use of weights and timm architectures.
support python 3.11
deprecate support for python 3.7

See the changes below for more information.

Thanks very much to our contributors!

What's Changed

add support for python 3.11 by @kaczmarj in #38
[ADD] vgg16 tils model by @kaczmarj in #112
add --segmentation-dir option with pre-existing tissue masks by @kaczmarj in #119
[ENH] adds ability to run inference inside ROI by @kaczmarj in #114
[ENH] use pytorch 2.0.0 as base image by @kaczmarj in #115
replace prad label grade4+5 -> grade4or5 by @kaczmarj in #122
fix bug in setting state dict from relative path by @kaczmarj in #123
handle Path instances for Weights.file by @kaczmarj in #127
fix auto-skip bug and gracefully handle failed patching by @kaczmarj in #130
Support MPS on Apple Silicon by @petebankhead in #132
REF: use torchscript models from huggingface hub by @kaczmarj in #144
[REF] use custom patching implementation and use Apache 2.0 license by @kaczmarj in #153
Remove model-specific dockerfiles + Remove ROI functionality by @kaczmarj in #155
Fix: use pep 604 type annotations by @kaczmarj in #156
Fix/setup.cfg by @swaradgat19 in #157
added pyproject.toml file by @swaradgat19 in #158
DOCS: update website, docstrings, and types for upcoming 0.4.0 release by @kaczmarj in #160
[DOCS] add version dropdown and code block copy button by @kaczmarj in #161
[ENH] rm pyyaml dep by @kaczmarj in #164
ADD: calcuate mpp with openslide tiff tags by @kaczmarj in #166

Full Changelog: v0.3.6...v0.4.0