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@leefall leefall commented Nov 26, 2021

Hi, I really appreciate your package and paper.
I found that some of the code scripts were not working because of dependent package updates and an indentation error.
The change about intervaltree is necessary to use DeviCNV unless the version of python packages is specified.

I replace 'search' with 'overlap' at line 180 and 245 because the package "intervaltree" does not support 'search' function anymore.
I replace 'search' with 'overlap' at line 140, 146 and 153 because the package "intervaltree" does not support 'search' function anymore.
I changed two tab indentations to 16 spaces indentation at line 263 because it caused "TabError: inconsistent use of tabs and spaces in indentation".
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