Github Action: Lint Notebooks

STRIDES · Jan 10, 2025 · 82c1c2a · 82c1c2a
1 parent eb932fa
commit 82c1c2a
Showing 1 changed file with 9 additions and 43 deletions.
diff --git a/notebooks/AWSBatch/Intro_AWS_Batch.ipynb b/notebooks/AWSBatch/Intro_AWS_Batch.ipynb
@@ -11,9 +11,7 @@
   {
    "cell_type": "markdown",
    "id": "cbc8a928-1080-4ddb-afb1-e5c6243c0dfd",
-   "metadata": {
-    "tags": []
-   },
+   "metadata": {},
    "source": [
     "**Skill Level:** Beginner"
    ]
@@ -238,9 +236,7 @@
   {
    "cell_type": "markdown",
    "id": "bde68279-0ad0-485f-90a0-2af1b10f9cbd",
-   "metadata": {
-    "tags": []
-   },
+   "metadata": {},
    "source": [
     "![batch6](../../docs/images/aws_batch_6.png)"
    ]
@@ -267,9 +263,7 @@
   {
    "cell_type": "markdown",
    "id": "4cb37046-067b-4894-860f-aa8f0aebce18",
-   "metadata": {
-    "tags": []
-   },
+   "metadata": {},
    "source": [
     "![batch7](../../docs/images/aws_batch_7.png)"
    ]
@@ -309,9 +303,7 @@
    "cell_type": "code",
    "execution_count": null,
    "id": "fc60c1f9-4bc2-4c3e-b9f3-ec0575fd8ec1",
-   "metadata": {
-    "tags": []
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
     "#Install nexflow, make it exceutable, and update it\n",
@@ -384,9 +376,7 @@
   {
    "cell_type": "markdown",
    "id": "7c2b7f5f-e09c-4558-86c3-dfb1a27f689a",
-   "metadata": {
-    "tags": []
-   },
+   "metadata": {},
    "source": [
     "### Submitting a AWS Batch Nextflow Job"
    ]
@@ -403,9 +393,7 @@
    "cell_type": "code",
    "execution_count": null,
    "id": "2b48b5b9-964a-40ab-8bd8-584d60a8bc27",
-   "metadata": {
-    "tags": []
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
     "BUCKET_NAME = 'ENTER_BUCKET_NAME'"
@@ -415,9 +403,7 @@
    "cell_type": "code",
    "execution_count": null,
    "id": "3cde3877-e08a-4d04-991a-96e945c8e895",
-   "metadata": {
-    "tags": []
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
     "!aws s3 mb s3://$BUCKET_NAME"
@@ -487,9 +473,7 @@
   {
    "cell_type": "markdown",
    "id": "8da22576-eb3f-44bf-b8f9-0b2163afce36",
-   "metadata": {
-    "tags": []
-   },
+   "metadata": {},
    "source": [
     "### Optional: Listing nf-core tools with docker and viewing their commands"
    ]
@@ -580,25 +564,7 @@
    ]
   }
  ],
- "metadata": {
-  "kernelspec": {
-   "display_name": "conda_python3",
-   "language": "python",
-   "name": "conda_python3"
-  },
-  "language_info": {
-   "codemirror_mode": {
-    "name": "ipython",
-    "version": 3
-   },
-   "file_extension": ".py",
-   "mimetype": "text/x-python",
-   "name": "python",
-   "nbconvert_exporter": "python",
-   "pygments_lexer": "ipython3",
-   "version": "3.10.15"
-  }
- },
+ "metadata": {},
  "nbformat": 4,
  "nbformat_minor": 5
 }