Welcome to this GitHub repositories
In here i did save work from and for my thesis
In the directory jupyternotebooks there you can find notebooks used for creating different plots for example the boxplots used in my thesis.
In the directory Plots you can find the plots which where used in the thesis. They come all from the script in jupyternotebooks.
In the directory Result there you can find 2 more directory. First directory named CAMI_AMBER_result_cami contain all result from the cami second challenge which was used to create the plots used in the thesis. The second directory named CAMI_AMBER_result_own contain the result of my own workflow which was use to create the plots used in the thesis. NOTE: maybe not all result was used for plotting graphics! Both directory contain a directory with the name CAMI_AMBER_result contain all important result from CAMI AMBER. The second directory in both main directory named copied_result_from_the_html, contain some result which are not outputted in any way from CAMI AMBER so it was taken from the CAMI_AMBER_HTML.html side to use them to create the plots.
Links to Galaxy and to the repositories:
- Main workflow
- GTDB-Tk subworkflow
- Marine dataset (default setting not pooled) Repository
- Marine dataset (DAS Tool high score) Repository
- Marine dataset (DAS Tool low score) Repository
- Marine dataset (Binner adjusted) Repository
- Marine dataset (default setting pooled) Repository
- CAMI Result for marine dataset Repository