Skip to content
@Shao-Group

Shao Group

Research Group in Computational Biology at Penn State

Popular repositories Loading

  1. lecture-notes-for-algorithms lecture-notes-for-algorithms Public

    TeX 32 2

  2. cmpsc465-fa20 cmpsc465-fa20 Public

    Python 19 40

  3. scallop2 scallop2 Public

    C++ 11 7

  4. subseqhash subseqhash Public

    C++ 8

  5. SubseqSketch SubseqSketch Public

    C++ 6

  6. rnabridge-align rnabridge-align Public

    rnabridge-align is an efficient tool to bridge paired-end RNA-seq reads

    C++ 5 1

Repositories

Showing 10 of 46 repositories
  • scallop2 Public
    C++ 11 BSD-3-Clause 7 4 0 Updated Apr 24, 2025
  • SubseqHash2 Public

    Fast, SIMD-accelerated, multi-set seeding algorithm for error-prone sequences

    C++ 5 BSD-3-Clause 0 0 0 Updated Apr 22, 2025
  • amaranth Public
    C++ 0 BSD-3-Clause 0 0 0 Updated Apr 22, 2025
  • aletsch Public

    Assembler for multiple RNA-seq samples

    C++ 4 BSD-3-Clause 1 1 0 Updated Apr 4, 2025
  • reinforce-assembly Public
    Python 0 0 0 0 Updated Mar 25, 2025
  • gat-lstm-assembly Public
    Python 0 0 0 0 Updated Feb 26, 2025
  • anchorage Public
    Python 0 BSD-3-Clause 1 0 0 Updated Feb 5, 2025
  • llmembedding Public
    Python 0 BSD-3-Clause 0 0 0 Updated Jan 27, 2025
  • SubseqSketch-test Public
    Python 0 0 0 0 Updated Jan 25, 2025
  • SubseqSketch Public
    C++ 6 0 0 0 Updated Jan 25, 2025
View all repositories