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small modify
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ShujiaHuang committed Sep 11, 2024
1 parent ca19200 commit 4761d29
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Showing 2 changed files with 4 additions and 4 deletions.
4 changes: 2 additions & 2 deletions src/basetype_caller.cpp
Original file line number Diff line number Diff line change
Expand Up @@ -88,7 +88,7 @@ void BaseTypeRunner::set_arguments(int cmd_argc, char *cmd_argv[]) {

// Output the commandline options
std::cout <<
"[INFO] BaseVar commandline and arguments:\n"
"[INFO] BaseVar arguments:\n"
"basevar basetype -R " + _args->reference + " \\ \n" + (_args->input_bf.empty() ? "" :
" -I " + ngslib::join(_args->input_bf, " -I ") + " \\ \n") + (_args->in_bamfilelist.empty() ? "" :
" -L " + _args->in_bamfilelist + " \\ \n") <<
Expand Down Expand Up @@ -1274,4 +1274,4 @@ IndelTuple __base_depth_and_indel(const std::vector<std::string> &align_bases) {
}
indel_string = (!indels.empty()) ? ngslib::join(indels, ",") : ".";
return std::make_tuple(indel_string, base_depth);
}
}
4 changes: 2 additions & 2 deletions src/basetype_utils.h
Original file line number Diff line number Diff line change
Expand Up @@ -26,7 +26,7 @@ static const std::string __BASETYPE_USAGE =

" -m, --min-af=float Setting prior precision of MAF and skip uneffective caller positions.\n"
" Usually you can set it to be min(0.001, 100/x), x is the number of input\n"
" BAM files.[min(0.001, 100/x)]. Probably you don't need to take care about\n"
" BAM files.[min(0.001, 100/x)]. In generally, you don't have to worry about\n"
" this parameter.\n"
" -q, --mapq=INT Only include reads with mapping quality >= INT. [10]\n"
" -B, --batch-count=INT INT simples per batchfile. [200]\n"
Expand Down Expand Up @@ -103,4 +103,4 @@ std::string cvg_header_define(const std::vector<std::string> &group_info, const
void merge_file_by_line(const std::vector<std::string> & infiles, const std::string &outfile,
std::string header, bool is_remove_tempfile=false);

#endif
#endif

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