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basevar v0.8.0
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@ShujiaHuang ShujiaHuang released this 03 Sep 15:00
v0.8.0
f8ddc80

This version has more than 10 times performance improvement than the preview version.

  • Use cython to improve the performance of BaseVar;
  • Use htslib instead of pysam. Now I give up pysam in BaseVar;
  • Make buffer for samples's BAM in specific genome regions, this could improve the performance;
  • Rewrite many codes and many functions;
  • Make smart-rerun much smarter;
  • give up Numpy in variant caller functions;
  • Use htslib for bgzip and tabix.
  • Fix some bugs.
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