LUNA16 Challenge Dataset

Instructions

Clone this repo and move the LUNA16 dataset to such directory, will look like that:

\--LUNA16-Image-Extractor
 |
 |--/CSVFILES
 |--/subset0
 |--/subset1
 |- ...
 |--README.md
 |--Pipfile
 |--Pipfile.lock
 |--requirements.txt

WARNING: Maybe happen with you some trouble with the dataset unpacking, to run around that:

zip -FFv subset_some_number.zip --out fixed_compressed_file.zip

and then:

unzip fixed_compressed_file.zip

Installing dependecies

If you are using pipenv:

pipenv install

if isn't:

pip install -r requirements.txt

Running

Edit the config file (config.example.yaml) with output and candidates directories and rename it to config.yaml.

Then execute:

pipenv run start --config='./config.yaml' --limit=1

or

python main.py --config='./config.yaml' --limit=1

Where:

• --config, the relative path to config.yaml file
• --limit, number of exams that will be analyzed