Merge pull request easybuilders#21957 from PetrKralCZ/20241203121206_…

…new_pr_Fiji2140

{vis}[system/system] Fiji v2.14.0 w/ Java 11

easybuild/easyconfigs/f/Fiji/Fiji-2.14.0-Java-11.eb

@@ -0,0 +1,52 @@
+easyblock = 'PackedBinary'
+
+name = 'Fiji'
+version = '2.14.0'
+versionsuffix = '-Java-%(javaver)s'
+
+homepage = 'https://fiji.sc/'
+description = """Fiji is an image processing package—a 'batteries-included' distribution of
+ ImageJ, bundling a lot of plugins which facilitate scientific image analysis.
+This release is based on ImageJ-2.1.0 and Fiji-2.1.1"""
+
+toolchain = SYSTEM
+
+source_urls = ['https://downloads.imagej.net/fiji/releases/%(version)s']
+sources = ['%(namelower)s-%(version)s-nojre.zip']
+checksums = ['1dcf6efd7a2c99b70ab921bea3b9e7c74ef99acf35b9857199de7f9c424187db']
+
+dependencies = [('Java', '11', '', SYSTEM)]
+
+postinstallcmds = [
+    # Remove binaries for other platforms
+    'rm %(installdir)s/{ImageJ-win32.exe,ImageJ-win64.exe}',
+    # Enable any update site (edit existing site with same parameters to enable it)
+    # Full list at https://imagej.github.io/list-of-update-sites/
+    '%(installdir)s/ImageJ-linux64 --default-gc --java-home "$EBROOTJAVA/lib/server/" --headless'
+    ' --update edit-update-site "ImageScience" https://sites.imagej.net/ImageScience/',
+    '%(installdir)s/ImageJ-linux64 --default-gc --java-home "$EBROOTJAVA/lib/server/" --headless'
+    ' --update edit-update-site "3D ImageJ Suite" https://sites.imagej.net/Tboudier/',
+    '%(installdir)s/ImageJ-linux64 --default-gc --java-home "$EBROOTJAVA/lib/server/" --headless'
+    ' --update edit-update-site "ilastik" https://sites.imagej.net/Ilastik/',
+    # Add a new update site
+    # '%(installdir)s/ImageJ-linux64 --headless --update add-update-site "New Name"'
+    # ' https://site.url/NewName/',
+    # Update the installation
+    '%(installdir)s/ImageJ-linux64 --default-gc --java-home "$EBROOTJAVA/lib/server/" --headless --update update',
+]
+
+sanity_check_paths = {
+    'files': ['ImageJ-linux64'],
+    'dirs': [],
+}
+
+modloadmsg = """
+Additional plugins can be installed in your $HOME/.plugins folder or requested to user support
+Use ImageJ/Fiji in headless mode in your scripts with the command `ImageJ-linux64 --headless`
+More information at https://imagej.net/Headless
+Also for Fiji 2.14.0 the arguments `--default-gc --java-home "$EBROOTJAVA/lib/server/"`
+should always be used when running `ImageJ-linux64` commands to avoid errors like:
+`Could not load Java library` and `Unrecognized option: -Xincgc`.
+"""
+
+moduleclass = 'vis'