Merge pull request easybuilders#22110 from laraPPr/20250103183242_new…

…_pr_pydot303

{bio,data,tools,vis}[GCCcore/13.3.0] pydot v3.0.3, XlsxWriter v3.2.0, openpyxl v3.1.5, ...

easybuild/easyconfigs/g/GOATOOLS/GOATOOLS-1.4.12-foss-2024a.eb

@@ -0,0 +1,72 @@
+# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild
+# Author: Denis Kristak
+# Update: Pavel Tománek (Inuits)
+
+easyblock = 'PythonPackage'
+
+name = 'GOATOOLS'
+version = '1.4.12'
+
+homepage = 'https://github.com/tanghaibao/goatools'
+description = "A Python library for Gene Ontology analyses"
+
+toolchain = {'name': 'foss', 'version': '2024a'}
+
+sources = [{
+    'git_config': {
+        'url': 'https://github.com/tanghaibao',
+        'repo_name': 'goatools',
+        'tag': 'v%(version)s',
+        'keep_git_dir': True,
+    },
+    'filename': SOURCE_TAR_GZ,
+}]
+checksums = [None]
+
+builddependencies = [('cURL', '8.7.1')]
+
+dependencies = [
+    ('Python', '3.12.3'),
+    ('SciPy-bundle', '2024.05'),
+    ('XlsxWriter', '3.2.0'),
+    ('statsmodels', '0.14.4'),
+    ('pydot', '3.0.3'),
+    ('openpyxl', '3.1.5'),
+]
+
+exts_defaultclass = 'PythonPackage'
+exts_default_options = {
+    'source_urls': [PYPI_SOURCE],
+    'download_dep_fail': True,
+    'use_pip': True,
+    'sanity_pip_check': True,
+}
+
+exts_list = [
+    ('ftpretty', '0.4.0', {
+        'checksums': ['61233b9212f2cceec96ee2c972738fa31cae7248e92d0874c99c04ee739bb5a9'],
+    }),
+]
+
+download_dep_fail = True
+use_pip = True
+
+postinstallcmds = ["cp -a %(builddir)s/goatools/data/ %(installdir)s/"]
+
+sanity_check_paths = {
+    'files': ['bin/find_enrichment.py'],
+    'dirs': ['data', 'lib/python%(pyshortver)s/site-packages'],
+}
+
+# example test run, see https://github.com/tanghaibao/goatools/blob/master/run.sh
+sanity_check_commands = [
+    "mkdir -p %(builddir)s",
+    "cd %(builddir)s && curl -OL http://geneontology.org/ontology/go-basic.obo",
+    "cd %(builddir)s && curl -OL http://www.geneontology.org/ontology/subsets/goslim_generic.obo",
+    "cd %(builddir)s && cp -a %(installdir)s/data .",
+    "cd %(builddir)s && find_enrichment.py --pval=0.05 --indent data/study data/population data/association",
+]
+
+sanity_pip_check = True
+
+moduleclass = 'bio'

easybuild/easyconfigs/o/openpyxl/openpyxl-3.1.5-GCCcore-13.3.0.eb

@@ -0,0 +1,35 @@
+easyblock = 'PythonBundle'
+
+name = 'openpyxl'
+version = '3.1.5'
+
+homepage = 'https://openpyxl.readthedocs.io'
+description = "A Python library to read/write Excel 2010 xlsx/xlsm files"
+
+toolchain = {'name': 'GCCcore', 'version': '13.3.0'}
+
+builddependencies = [('binutils', '2.42')]
+
+dependencies = [
+    ('Python', '3.12.3'),
+    ('lxml', '5.3.0'),
+    ('Pillow', '10.4.0'),
+]
+
+use_pip = True
+
+exts_list = [
+    ('et_xmlfile', '2.0.0', {
+        'checksums': ['dab3f4764309081ce75662649be815c4c9081e88f0837825f90fd28317d4da54'],
+    }),
+    ('jdcal', '1.4.1', {
+        'checksums': ['472872e096eb8df219c23f2689fc336668bdb43d194094b5cc1707e1640acfc8'],
+    }),
+    (name, version, {
+        'checksums': ['cf0e3cf56142039133628b5acffe8ef0c12bc902d2aadd3e0fe5878dc08d1050'],
+    }),
+]
+
+sanity_pip_check = True
+
+moduleclass = 'data'

easybuild/easyconfigs/p/pydot/pydot-3.0.3-GCCcore-13.3.0.eb

@@ -0,0 +1,28 @@
+# updated: Denis Kristak, Pavel Tománek (INUITS)
+easyblock = 'PythonBundle'
+
+name = 'pydot'
+version = '3.0.3'
+
+homepage = 'https://github.com/pydot/pydot'
+description = "Python interface to Graphviz's Dot language."
+
+toolchain = {'name': 'GCCcore', 'version': '13.3.0'}
+
+builddependencies = [('binutils', '2.42')]
+
+dependencies = [
+    ('Python', '3.12.3'),
+    ('Python-bundle-PyPI', '2024.06'),
+]
+
+exts_list = [
+    (name, version, {
+        'checksums': ['5e009d97b2fff92b7a88f09ec1fd5b163f07f3b10469c927d362471d6faa0d50'],
+    }),
+]
+
+use_pip = True
+sanity_pip_check = True
+
+moduleclass = 'vis'

easybuild/easyconfigs/x/XlsxWriter/XlsxWriter-3.2.0-GCCcore-13.3.0.eb

@@ -0,0 +1,34 @@
+easyblock = 'PythonPackage'
+
+name = 'XlsxWriter'
+version = '3.2.0'
+
+homepage = 'https://xlsxwriter.readthedocs.io/'
+description = "A Python module for creating Excel XLSX files"
+
+toolchain = {'name': 'GCCcore', 'version': '13.3.0'}
+
+sources = [SOURCE_TAR_GZ]
+checksums = ['9977d0c661a72866a61f9f7a809e25ebbb0fb7036baa3b9fe74afcfca6b3cb8c']
+
+builddependencies = [
+    ('binutils', '2.42'),
+]
+
+dependencies = [
+    ('Python', '3.12.3'),
+]
+
+download_dep_fail = True
+use_pip = True
+
+sanity_check_paths = {
+    'files': ['bin/vba_extract.py'],
+    'dirs': ['lib/python%(pyshortver)s/site-packages'],
+}
+
+sanity_check_commands = ['vba_extract.py --help']
+
+sanity_pip_check = True
+
+moduleclass = 'tools'