SkafteNicki · SkafteNicki · Oct 27, 2023 · Oct 25, 2023 · Oct 25, 2023 · Oct 26, 2023
diff --git a/data/corruptmnist/test.npz b/data/corruptmnist/test.npz
diff --git a/data/corruptmnist/test_images.pt b/data/corruptmnist/test_images.pt
diff --git a/data/corruptmnist/test_target.pt b/data/corruptmnist/test_target.pt
diff --git a/data/corruptmnist/train_0.npz b/data/corruptmnist/train_0.npz
diff --git a/data/corruptmnist/train_1.npz b/data/corruptmnist/train_1.npz
diff --git a/data/corruptmnist/train_2.npz b/data/corruptmnist/train_2.npz
diff --git a/data/corruptmnist/train_3.npz b/data/corruptmnist/train_3.npz
diff --git a/data/corruptmnist/train_4.npz b/data/corruptmnist/train_4.npz
diff --git a/data/corruptmnist/train_images_0.pt b/data/corruptmnist/train_images_0.pt
diff --git a/data/corruptmnist/train_images_1.pt b/data/corruptmnist/train_images_1.pt
diff --git a/data/corruptmnist/train_images_2.pt b/data/corruptmnist/train_images_2.pt
diff --git a/data/corruptmnist/train_images_3.pt b/data/corruptmnist/train_images_3.pt
diff --git a/data/corruptmnist/train_images_4.pt b/data/corruptmnist/train_images_4.pt
diff --git a/data/corruptmnist/train_images_5.pt b/data/corruptmnist/train_images_5.pt
diff --git a/data/corruptmnist/train_target_0.pt b/data/corruptmnist/train_target_0.pt
diff --git a/data/corruptmnist/train_target_1.pt b/data/corruptmnist/train_target_1.pt
diff --git a/data/corruptmnist/train_target_2.pt b/data/corruptmnist/train_target_2.pt
diff --git a/data/corruptmnist/train_target_3.pt b/data/corruptmnist/train_target_3.pt
diff --git a/data/corruptmnist/train_target_4.pt b/data/corruptmnist/train_target_4.pt
diff --git a/data/corruptmnist/train_target_5.pt b/data/corruptmnist/train_target_5.pt
diff --git a/data/corruptmnist_v2/train_5.npz b/data/corruptmnist_v2/train_5.npz
diff --git a/data/corruptmnist_v2/train_6.npz b/data/corruptmnist_v2/train_6.npz
diff --git a/data/corruptmnist_v2/train_7.npz b/data/corruptmnist_v2/train_7.npz
diff --git a/data/corruptmnist_v2/train_images_6.pt b/data/corruptmnist_v2/train_images_6.pt
diff --git a/data/corruptmnist_v2/train_images_7.pt b/data/corruptmnist_v2/train_images_7.pt
diff --git a/data/corruptmnist_v2/train_images_8.pt b/data/corruptmnist_v2/train_images_8.pt
diff --git a/data/corruptmnist_v2/train_images_9.pt b/data/corruptmnist_v2/train_images_9.pt
diff --git a/data/corruptmnist_v2/train_target_6.pt b/data/corruptmnist_v2/train_target_6.pt
diff --git a/data/corruptmnist_v2/train_target_7.pt b/data/corruptmnist_v2/train_target_7.pt
diff --git a/data/corruptmnist_v2/train_target_8.pt b/data/corruptmnist_v2/train_target_8.pt
diff --git a/data/corruptmnist_v2/train_target_9.pt b/data/corruptmnist_v2/train_target_9.pt
diff --git a/figures/conda_activate.PNG b/figures/conda_activate.PNG
diff --git a/figures/standards.png b/figures/standards.png
diff --git a/mkdocs.yml b/mkdocs.yml
@@ -49,6 +49,7 @@ markdown_extensions:
   - def_list
   - pymdownx.tasklist:
       custom_checkbox: true
+  - pymdownx.superfences
 
 plugins:
   - search
@@ -72,7 +73,7 @@ nav:
   - S1 - Development Environment 💻:
     - s1_development_environment/README.md
     - M1 - The command line: s1_development_environment/command_line.md
-    - M2 - Conda: s1_development_environment/conda.md
+    - M2 - Package Manager: s1_development_environment/package_manager.md
     - M3 - Editor: s1_development_environment/editor.md
     - M4 - Deep Learning Software: s1_development_environment/deep_learning_software.md
   - S2 - Organisation and Version Control 📁:

diff --git a/requirements.txt b/requirements.txt
@@ -1,5 +1,5 @@
 # Documentation
-mkdocs-material>=9.1.6
+mkdocs-material>=9.4.6
 mkdocs-glightbox>=0.3.2
 mkdocs-material-extensions
 pymdown-extensions>=1.1.1

diff --git a/s10_extra/high_performance_clusters.md b/s10_extra/high_performance_clusters.md
@@ -82,8 +82,9 @@ of cluster. For the purpose of this exercise we are going to see how we can run
     start by opening a terminal.
 
    1. Lets start by setting up conda for controlling our dependencies. If you have not already worked with `conda`,
-        please checkout module [M2 on conda](../s1_development_environment/conda.md). In general you should be able to
-        setup (mini)conda through these two commands:
+        please checkout module
+        [M2 on package managers and virtual environments](../s1_development_environment/package_manager.md). In general
+        you should be able to setup (mini)conda through these two commands:
 
         ```bash
         wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh

diff --git a/s1_development_environment/command_line.md b/s1_development_environment/command_line.md
@@ -7,8 +7,8 @@
 !!! info "Core Module"
 
 <figure markdown>
-  ![Image](../figures/terminal_power.jpg){ width="500" }
-  <figcaption> <a href="https://twitter.com/rorypreddy/status/1257336536477171712"> Image credit </a> </figcaption>
+![Image](../figures/terminal_power.jpg){ width="500" }
+<figcaption> <a href="https://twitter.com/rorypreddy/status/1257336536477171712"> Image credit </a> </figcaption>
 </figure>
 
 Contrary to popular belief, the command line (also commonly known as the *terminal*) is not a mythical being that has
@@ -115,7 +115,7 @@ command line.
 
     3. Try to Google how to write a simple for-loop that executes the python script 10 times in a row.
 
-## Knowledge check
+## 🧠 Knowledge check
 
 ??? question "Knowledge question 1"
 
@@ -155,5 +155,5 @@ This ends the module on the command line. If you are still not comfortable worki
 we are going to use it extensively throughout the course. If you want to spend additional time on this topic, we highly
 recommend that you [watch this video](https://www.youtube.com/watch?v=oxuRxtrO2Ag) on how to use the command line.
 
-If you are interested in personalizing your terminal, you can check out the [starship](https://starship.rs/) project,
-that allows you to customize your terminal with a lot of different options.
+If you are interested in personalizing your command line, you can check out the [starship](https://starship.rs/)
+project, that allows you to customize your command line with a lot of different options.
diff --git a/s1_development_environment/conda.md b/s1_development_environment/conda.md