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SkyeAv/README.md

Skye Lane Goetz

Biomedical Research Scientist (AI & Data)

Integrating Artificial Intelligence, Data Science, and Multiomics for Biological Systems Discovery. Focus on Knowledge Graphs, Explainable Models, and Large-Scale Biomedical Data Integration.

  • Languages: Python, Elixir, SQL, Shell Scripting, LaTeX, Julia, Nim, Clojure
  • Data Science: Polars, Spark, Numpy, Matplotlib, Sqlite, Postgres, DuckDB
  • AI/ML: PyTorch, LightGBM, Scikit-learn, LangChain, Snorkel, Transformers, PEFT, ChromaDB
  • Knowledge Graphs: Graph Databases, Ontology, KGX, Centrality, Graph Neural Networks
  • NLP: spaCy, NLTK, Embeddings, Text Classification, TF-IDF
  • DevOps: Nix, Docker, Setuptools, Mix, Pytest, Kubernetes
  • Biology: Heterogenous Multiomic Data, Shotgun Metagenomics, Polygenic Risk Scores, ELISA
  • Chemistry: DFT, Mass Spectrometry, Proton NMR, FTIR, Organic Synthesis, Equillibreum
  • Hobbies: Cooking, Skiing, Geometry Dash, Gardening, Travel, Hiking

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  1. Tablassert Tablassert Public

    Tablassert is a multipurpose tool that crafts knowledge assertions from tabular data, augments knowledge with configuration, and exports knowledge as Knowledge Graph Exchange (KGX) consistent TSVs.

    Python 3

  2. TableConfigAgent TableConfigAgent Public

    A Configurable Agentic Platform (With Hugging Face Transformers And Langchain) To Draft Semantically Tablassert TableConfigs From Natural Language Inputs.

    Python 2

  3. CTClassifier CTClassifier Public

    LightGBM Based Declarative GPU Accelerated Bionomial Classification Of Clinical Trial Data Equiped With Multiple Vizualizations And Exports. Based On AACT Database.

    Python 1

  4. glusman-team/MOKGConfiguration glusman-team/MOKGConfiguration Public

    The up-to-date open-source configuration for MicrobiomeKG and MultiomicsKG builds. The current builds use the Tablassert knowledge extractor and are deployed to the NCATS Translator ecosystem via P…

    1 1

  5. glusman-team/TableConfig glusman-team/TableConfig Public

    The TableConfig microservice for the new distributed, cloud-native Tablassert knowledge extractor. TableConfigs declare instructions that Tablassert uses to extract knowledge assertions from tabula…

    Python 1

  6. SkyeCV SkyeCV Public

    My Latest LaTeX CV With An Emphasis On ATS. Based Off The ModernCV Package. Feel Free to Use This As A Template To Build Your Own.

    TeX 1