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…te into develop

docs/integrate/index.md

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 `rpt integrate` is the command for mixed RDF data and SPARQL statement processing. The name stems from the various SPARQL extensions that make it possible to reference and process non-RDF data inside a SPARQL statements.
 
-
-
 ## Basic Usage
 
 ### Example 1: Simple Processing
@@ -75,6 +73,13 @@ Endpoints protected by basic authentication can be proxied by supplying the cred
 Note, that this is **unsafe** and should be avoided in production, but it can be useful during development.
 
 
+### Example 5: Indexing Spatial Data
+
+Data that follows the GeoSPARQL standard can be indexed by providing the `--geoindex` option. The index will be automatically updated on the first query or update request that needs to access the data after any data modification.
+Statements that intrinsically do not rely on the spatial index, namely `LOAD`, `INSERT DATA` and `DELETE DATA` mark the spatial index as potentially dirty but do not trigger immediate index recreation.
+
+`rpt integrate --server --geoindex spatial-data.ttl`
+
 
 ## Embedded SPARQL Engines
 

docs/rml/index.md

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-title: Publications
+title: R2RML and RML
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 # Knowledge Graph Construction with (R2)RML
 
-RPT can translate RML and R2RML to SPARQL that can be run either with the [`integrate`](integrate) (single-threaded) or the [`sansa query`](sansa) (multi-threaded) commands.
+RPT can translate RML and R2RML to SPARQL that can be run either with the [`integrate`](../integrate) (single-threaded) or the [`sansa query`](../sansa/query) (multi-threaded) commands.
+Note, that the generated SPARQL queries can be also be executed against the SPARQL endpoint launched by `rpt integrate --server`. This can be used to test and inspect individual SPARQL queries and the corresponding (R2)RML mappings.
 
 ## Basic Usage