style(ruff): resolve all outstanding default violations

[sfc-gh-twhite]

This change finally clears all of the basic ruff violations that still existed in the repository. This included things such as:

• redundant imports, where name conflicts overwrote existing imports
• importing multiple modules or functions on the same import line
• base exceptions with catching a specific type (admittedly, going from except: to exception Exception isn't much better but we can handle these separately)
• removing unused imports

These changes will now make it possible to run the standard ruff check in pre-commit rather than only using the formatted. I also went ahead and updated the versions in the pre-commit file so that we're using the latest.

[sfc-gh-twhite]

@sfc-gh-alherrera - The import separation on the notebooks makes the diff look pretty intimidating; here's a view that makes it much easier to digest.

[sfc-gh-twhite]

@sfc-gh-alherrera - we did end up having a conflict after merging in #70, but it was only in the notebook. I took the notebook as you had it and applied the linting fixes so that it still includes the run showing the summarize logs.

Thanks for the approval!