Update muscle_adipose_tissue.py (#125)

StanfordMIMI · Nov 1, 2023 · 470f4c4 · 470f4c4
1 parent 511ae55
commit 470f4c4
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/comp2comp/muscle_adipose_tissue/muscle_adipose_tissue.py b/comp2comp/muscle_adipose_tissue/muscle_adipose_tissue.py
@@ -275,10 +275,10 @@ def _fill_holes(self, mask: np.ndarray, mask_id: int):
         # Larger threshold for SAT
         # TODO make this configurable / parameter
         if mask_id == 2:
-            min_size = 200
+            min_size = 50
         else:
             # min_size = 50  # Smaller threshold for everything else
-            min_size = 20
+            min_size = 5
         img_out = np.ones_like(mask)
         for i in range(0, components):
             if sizes[i] > min_size: