v1.6.0
Move CEFCON
,GNTD
,mofapy2
,spaceflow
,spatrio
,STAligner
,tosica
from root to externel module.
space Module
- Added
STT
inomicverse.space
to calculate the spatial transition tensor. - Added
scSLAT
inomicverse.externel
to align of different spatial slices. - Added
PROST
inomicverse.externel
andsvg
inomicverse.space
to identify the spatially variable genes and domain.
single Module
- Added
get_results_rfc
inomicverse.single.cNMF
to predict the precise cluster in complex scRNA-seq/stRNA-seq - Added
get_results_rfc
inomicverse.utils.LDA_topic
to predict the precise cluster in complex scRNA-seq/stRNA-seq - Added
gptcelltype
inomicverse.single
to annotate celltype using large language model #82.
pl Module
- Added
plot_spatial
inomicverse.pl
to visual the spot proportion of cells when deconvolution