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@Starlitnightly Starlitnightly released this 08 Jun 07:00
· 115 commits to master since this release

Move CEFCON,GNTD,mofapy2,spaceflow,spatrio,STAligner,tosica from root to externel module.

space Module

  • Added STT in omicverse.space to calculate the spatial transition tensor.
  • Added scSLAT in omicverse.externel to align of different spatial slices.
  • Added PROST in omicverse.externel and svg in omicverse.space to identify the spatially variable genes and domain.

single Module

  • Added get_results_rfc in omicverse.single.cNMF to predict the precise cluster in complex scRNA-seq/stRNA-seq
  • Added get_results_rfc in omicverse.utils.LDA_topic to predict the precise cluster in complex scRNA-seq/stRNA-seq
  • Added gptcelltype in omicverse.single to annotate celltype using large language model #82.

pl Module

  • Added plot_spatial in omicverse.pl to visual the spot proportion of cells when deconvolution