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@StatFunGen

StatFunGen

where statistical genetics converges with functional genomics

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  1. xqtl-protocol xqtl-protocol Public

    Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium

    Jupyter Notebook 43 46

  2. pecotmr pecotmr Public

    Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.

    C++ 22 18

  3. pixi-setup pixi-setup Public

    Default software packages installation on PC, Mac, HPC and cloud via pixi

    Python 1

  4. SuSiEGLMM.jl SuSiEGLMM.jl Public

    Julia package for sum of single effects regression with generalized linear mixed model

    Julia

  5. simxQTL simxQTL Public

    In house simulation R package to support investigations of various QTL association methods

    Jupyter Notebook 4

  6. mmcloud mmcloud Public

    Utilities to manage jobs on MMCloud from MemVerge Inc

    Shell 1

Repositories

Showing 6 of 6 repositories
  • pecotmr Public

    Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.

    StatFunGen/pecotmr’s past year of commit activity
    C++ 22 18 6 0 Updated Mar 19, 2025
  • xqtl-protocol Public

    Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium

    StatFunGen/xqtl-protocol’s past year of commit activity
    Jupyter Notebook 43 MIT 46 70 (5 issues need help) 1 Updated Mar 19, 2025
  • pixi-setup Public

    Default software packages installation on PC, Mac, HPC and cloud via pixi

    StatFunGen/pixi-setup’s past year of commit activity
    Python 1 MIT 0 1 0 Updated Mar 19, 2025
  • mmcloud Public

    Utilities to manage jobs on MMCloud from MemVerge Inc

    StatFunGen/mmcloud’s past year of commit activity
    Shell 0 MIT 1 0 0 Updated Mar 11, 2025
  • simxQTL Public

    In house simulation R package to support investigations of various QTL association methods

    StatFunGen/simxQTL’s past year of commit activity
    Jupyter Notebook 0 MIT 4 1 1 Updated Feb 28, 2025
  • SuSiEGLMM.jl Public

    Julia package for sum of single effects regression with generalized linear mixed model

    StatFunGen/SuSiEGLMM.jl’s past year of commit activity
    Julia 0 MIT 0 0 0 Updated Feb 20, 2025

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