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Add back Meta vignette index, standardize vignette names, and update …
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| Original file line number | Diff line number | Diff line change |
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| @@ -1,10 +1,22 @@ | ||
| # Release summary | ||
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| ## Test environments | ||
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| * Local OSX install, R 4.0.0 | ||
| * Ubuntu 16.04 (xenial on Travis-CI) - R-release 4.0.0, R-oldrel (3.6.3), R-devel (eventually 4.1.0). | ||
| * Windows (on Appveyor) - R 4.0.2 | ||
| * Win-builder - R-release 4.0.0 | ||
| * local mac OS install, R 4.0.2 | ||
| * ubuntu 16.04 (on github actions), R-release, R 4.0.2 | ||
| * mac OS 10.15.5 (on github actions) R-release, R 4.0.2 | ||
| * Microsoft Windows Server 2019 10.0.17763 (on github actions) R-release, R 4.0.2 | ||
| * win-builder (devel) | ||
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| ## R CMD check results | ||
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| 0 ERRORs | 0 WARNINGs | 0 NOTEs | ||
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| ---- | ||
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| ## revdepcheck results | ||
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| We checked 0 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package. | ||
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| * We saw 0 new problems | ||
| * We failed to check 0 packages |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,9 @@ | ||
| checks | ||
| library | ||
| checks.noindex | ||
| library.noindex | ||
| data.sqlite | ||
| *.html | ||
| download | ||
| lib | ||
| cloud.noindex |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,84 @@ | ||
| if (Sys.getenv("DISPLAY") == "") stop("Run with xvfb-run") | ||
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| free <- system(paste0("df --output=avail ", tempdir(), " | tail -n 1"), intern = TRUE) | ||
| if (as.numeric(free) < 1e8) stop("Set TMPDIR to a location with at least 100 GB free space") | ||
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| package <- basename(getwd()) | ||
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| library(revdepcheck) | ||
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| dir_setup(getwd()) | ||
| if (!revdepcheck:::db_exists(getwd())) { | ||
| revdepcheck:::db_setup(getwd()) | ||
| } | ||
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| if (length(revdep_todo()) == 0) { | ||
| import_revdeps <- revdepcheck:::cran_revdeps(package = package, dependencies = c("Depends", "Imports"), bioc = TRUE) | ||
| import_revdeps <- setdiff(import_revdeps, package) | ||
| todo_import_revdeps <- import_revdeps | ||
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| while (FALSE && length(todo_import_revdeps) > 0) { | ||
| print(length(todo_import_revdeps)) | ||
| print(todo_import_revdeps) | ||
| print(Sys.time()) | ||
| new_import_revdeps <- unlist(purrr::map(todo_import_revdeps, revdepcheck:::cran_revdeps, dependencies = c("Depends", "Imports"), bioc = TRUE)) | ||
| todo_import_revdeps <- setdiff(new_import_revdeps, import_revdeps) | ||
| import_revdeps <- union(import_revdeps, new_import_revdeps) | ||
| print(new_import_revdeps) | ||
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| break # only one level for now | ||
| } | ||
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| weak_revdeps <- revdepcheck:::cran_revdeps(package = package, dependencies = c("Suggests", "Enhances", "LinkingTo"), bioc = TRUE) | ||
| print(weak_revdeps) | ||
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| revdep_add(".", c(import_revdeps, weak_revdeps)) | ||
| } | ||
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| options(repos = revdepcheck:::get_repos(bioc = TRUE)) | ||
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| todo <- revdep_todo() | ||
| withr::with_temp_libpaths(action = "replace", { | ||
| crancache::install_packages(c( | ||
| todo, | ||
| "pillar" | ||
| )) | ||
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| remotes::install_local(".") | ||
| }) | ||
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| repos <- paste0( | ||
| "file://", | ||
| file.path(crancache::get_cache_dir(), c("cran-bin", "bioc-bin", "other-bin")) | ||
| ) | ||
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| names(repos) <- c("CRAN", "Bioc", "other") | ||
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| options(repos = repos) | ||
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| N <- 100 | ||
| for (i in seq_len(N)) { | ||
| try( | ||
| revdepcheck::revdep_check( | ||
| bioc = TRUE, | ||
| dependencies = character(), | ||
| quiet = FALSE, | ||
| num_workers = 24, | ||
| timeout = as.difftime(60, units = "mins") | ||
| ) | ||
| ) | ||
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| if (length(revdep_todo()) == 0) break | ||
| } | ||
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| options(repos = revdepcheck:::get_repos(bioc = TRUE)) | ||
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| withr::with_output_sink( | ||
| "revdep/cran.md", | ||
| revdep_report_cran() | ||
| ) | ||
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| system("git add revdep/*.md") | ||
| system("git commit -m 'update revdep results'") | ||
| system("git push -u origin HEAD") |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,7 @@ | ||
| ## revdepcheck results | ||
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| We checked 0 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package. | ||
|
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| * We saw 0 new problems | ||
| * We failed to check 0 packages | ||
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