Merge pull request #14 from MDE/init_imports

MDE/init_imports

data_collection/__init__.py

@@ -11,12 +11,48 @@
 """
 
 # CONSTANTS IMPORT
-from .constants import *
+from .constants import (
+  # URLs for LOVD database
+  LOVD_URL, LOVD_URL_EYS, LOVD_FILE_URL, LOVD_FILE_URL_EYS,
 
+  # URLs for gnomAD database
+  GNOMAD_URL, GNOMAD_URL_EYS, GNOMAD_FILE_URL_EYS,
+
+  # URLs for ClinVar database
+  CLINVAR_URL, CLINVAR_URL_EYS, CLINVAR_FILE_URL_EYS,
+
+  # Paths for data storage
+  DATA_PATH, LOVD_PATH, GNOMAD_PATH, CLINVAR_PATH,
+
+  # Data types for tables
+  LOVD_TABLES_DATA_TYPES,
+
+  # Paths for database downloads
+  DATABASES_DOWNLOAD_PATHS
+)
 
 # DATA COLLECTION IMPORT
-from .collection import *
+from .collection import (
+    # Custom exceptions
+    BadResponseException,
+    DownloadError,
+
+    # Custom utility functions
+    get_file_from_url,
+
+    # Functions for downloading databases
+    download_lovd_database_for_eys_gene,
+    download_genes_lovd,
+    download_database_for_eys_gene,
 
+    # Functions for storing databases
+    store_database_for_eys_gene
+)
 
 # DATA REFACTORING IMPORT
-from .refactoring import *
+from .refactoring import (
+  # Functions for refactoring data
+  convert_lovd_to_datatype,
+  parse_lovd,
+  from_clinvar_name_to_cdna_position
+)