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fix page details and workflow
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nick-robo committed Oct 12, 2023
1 parent c3d3644 commit 9c72e0c
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10 changes: 0 additions & 10 deletions .github/workflows/basic_checks.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -28,16 +28,6 @@ jobs:
path: /usr/local/lib/R/site-library
key: ${{ env.cache-version }}-${{ runner.os }}-r-${{ hashFiles('.github/depends.Rds') }}
restore-keys: ${{ env.cache-version }}-${{ runner.os }}-r-

# This lets us augment with additional dependencies
- name: Install system dependencies
if: runner.os == 'Linux'
env:
RHUB_PLATFORM: linux-x86_64-ubuntu-gcc
run: |
Rscript -e "remotes::install_github('r-hub/sysreqs')"
sysreqs=$(Rscript -e "cat(sysreqs::sysreq_commands('DESCRIPTION'))")
sudo -s eval "$sysreqs"

- name: Install dependencies
run: |
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9 changes: 3 additions & 6 deletions DESCRIPTION
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@@ -1,4 +1,4 @@
Package: SCDNEYWorkshop
Package: SCDNEYWorkshop
Title: Unlocking insights for single cell and spatial data with scFeatures
Version: 2.0.0
Authors@R: c(
Expand All @@ -23,10 +23,7 @@ Authors@R: c(
role = c("aut"),
email = "jean.yang@sydney.edu.au")
)
Description: This package serves as a template for using github actions to
prepare a Bioconductor Workshop package for use. In particular,
a pkgdown website and docker image are generated based on workflow
settings.
Description: As single-cell technology advances, the number of multi-condition multi-sample datasets increases. The workshop will discuss the challenges and analytical focus associated with disease outcome prediction and prognosis using multi-condition multi-sample spatial patient data. We will also talk about general analytic strategies and the critical thinking questions that arise in the process.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Expand All @@ -41,7 +38,7 @@ Suggests:
URL: https://seandavi.github.io/BuildABiocWorkshop/
BugReports: https://github.com/seandavi/BuildABiocWorkshop/issues/new/choose
VignetteBuilder: knitr
DockerImage: ghcr.io/seandavi/buildabiocworkshop:latest
DockerImage: ghcr.io/SydneyBioX/SCDNEY-Unlocking-insights-for-single-cell-and-spatial-data-with-scFeatures:latest
Imports:
SingleCellExperiment,
ggplot2,
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6 changes: 3 additions & 3 deletions _pkgdown.yml
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@@ -1,18 +1,18 @@
url: https://seandavi.github.io/BuildABiocWorkshop
url: https://SydneyBioX.github.io/SCDNEY-Unlocking-insights-for-single-cell-and-spatial-data-with-scFeatures

template:
params:
bootswatch: flatly
#ganalytics: UA-99999999-9

home:
title: "BuildABiocWorkshop"
title: "SCDNEYWorkshop"
type: inverse


navbar:
right:
- icon: fa-github
href: https://github.com/seandavi/BuildABiocWorkshop
href: https://github.com/SydneyBioX/SCDNEY-Unlocking-insights-for-single-cell-and-spatial-data-with-scFeatures


115 changes: 115 additions & 0 deletions docs/404.html

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89 changes: 89 additions & 0 deletions docs/LICENSE-text.html

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