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- Make sure you have a Python installation with the
condapackage manager on your system. We currently recommend miniforge. - Run
make install - Run
./run_ginput.py --helpto see available subcommands - For more detailed help, try
man ginputafter runningmake install. (If that doesn't work, tryman man/build/man/ginput.1from this directory or addman/build/man/to yourMANPATH).
For more install options, run make help.
To check whether your installation is working, there are example .mod, .vmr, .map,
and .map.nc files in ginput/testing/test_input_data that have been generated from
both GEOS-FPIT and GEOS-FP. While TCCON uses GEOS-FPIT, it requires a data subscription,
so you may prefer to use GEOS-FP.
To verify you have installed and are using ginput correctly, we recommend you generate
at least the .mod and .vmr files for Lamont (site code "oc") on 1 Jan 2018 and compare
against the pregenerated test files. Differences should be less than ~1%.
If you have GEOS FP-IT files available on your system, the script
ginput/testing/test_input_data/geosfp-it/link_geos_fpit_files.sh will help link them
to the correct location in this repo to run the automatic test case. cd to
ginput/testing/test_input_data/geosfp-it/ and run ./link_geos_fpit_files.sh --help
to see its usage. This requires the following files:
- The 8 model level assimilated quantity files for 2018-01-01 (
GEOS.fpit.asm.inst3_3d_asm_Nv.GEOS5124.20180101*.nc4) - The 8 2D assimilated quantity files for 2018-01-01 (
GEOS.fpit.asm.inst3_2d_asm_Nx.GEOS5124.20180101*.nc4) - The 8 model level chemistry files for 2018-01-01 (
GEOS.fpit.asm.inst3_3d_chm_Nv.GEOS5124.20180101*.nc4)
To run the test, the easiest way is to activate the conda environment that ginput was installed
in (ginput-auto-default if installed with make install) and run make test. This will take
several minutes to run. If tests fail because the output .mod/.vmr/.map files do not match the expected,
plots will be generated in ginput/testing/plots for you to inspect the differences and verify that
they are reasonable.
Man pages are created in man/build/man/ during installation and can be accessed with e.g. man man/build/man/ginput.1.
These may also be added to your MANPATH so that e.g. man ginput works, but this is system dependent. Full documentation
is provided at https://ginput.readthedocs.io/en/latest/.
Some additional documentation is provided on the TCCON wiki:
These will be folded into the readthedocs instance in the future.
Ginput is licensed under the Apache license as of 8 Sept 2022. Prior to this date, it was licensed under the LGPL license. If you download this software after 8 Sept 2022, you agree to abide by the terms of the Apache license. The full legal terms are contained in LICENSE.txt file. For a short summary, please see here. If you have any questions about use, please contact us (contact information is below).
In addition to the Apache license, you should cite the ginput paper in any publications resulting from the use of ginput. (At time of release, the manuscript is still in preparation, so contact us for the citation.) Please also consider contacting us to let us know you are using ginput!
Only Python 3 is supported. Python 2 reached end-of-life on 1 Jan 2020.
We also require that the conda package manager provided with the Anaconda
Python distribution be installed, and so only officially support Anaconda or
Miniconda Python.
If you have Anaconda or Miniconda based on Python 2 installed, that should work, as ginput is configured to create a Python 3 environment for itself on install. This also ensures that it's dependencies do not conflict with your existing setup.
For assistance with ginput, contact Josh Laughner.