New Meta Package and support GLDAS early product (#36)

* Install pygrib via conda

* Fix folder detection for new trollsift version

* Update travis install

* Update CI

* Update README.rst

* Exclude pytest v3.9.1

* Add coveragerc

* Update test-requirements.txt

* include varnames

* Add gitattributes and update coveragerc

* Update environment.yml

* Add support for GLDAS EP

* Fix pep8 formatting

* Clean up

* Update test to always use bbox

* Update pyscaffold

* Add CI workflow

* Reduce builds for now

* Update tests for GHA, docs and deprecation warning

* Update ci

* Add return value

* Update deprecation warning

* Fix open files issue on windows

* Update changelog and readme

.coveragerc

@@ -2,7 +2,7 @@
 [run]
 branch = True
 source = gldas
-# omit = bad_file.py
+omit = */_version.py
 
 [paths]
 source =

.gitattributes

@@ -0,0 +1 @@
+pygeobase/_version.py export-subst

.github/workflows/ci.yml

@@ -0,0 +1,119 @@
+
+# This workflow will install Python dependencies and run tests on
+# windows and linux systems with a variety of Python versions
+
+# For more information see:
+# https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions
+
+name: Automated Tests
+
+on:
+  push:
+  pull_request:
+  schedule:
+    - cron: '0 0 * * *' # daily
+
+jobs:
+  build:
+    name: Build py${{ matrix.python-version }} @ ${{ matrix.os }} 🐍
+    runs-on: ${{ matrix.os }}
+    strategy:
+      matrix:
+        python-version: ['3.8', '3.9', '3.10']
+        os: ["ubuntu-latest", "windows-latest"]
+
+    steps:
+      - uses: actions/checkout@v2
+        with:
+          submodules: true
+      - uses: conda-incubator/setup-miniconda@v2.0.1
+        with:
+          miniconda-version: "latest"
+          auto-update-conda: true
+          python-version: ${{ matrix.python-version }}
+          environment-file: environment.yml
+          activate-environment: gldas
+          auto-activate-base: false
+      - name: Print environment infos
+        shell: bash -l {0}
+        run: |
+          conda info -a
+          conda list
+          pip list
+          which pip
+          which python
+      - name: Export Environment
+        shell: bash -l {0}
+        run: |
+          mkdir -p .artifacts
+          filename=env_py${{ matrix.python-version }}_${{ matrix.os }}.yml
+          conda env export --no-builds | grep -v "prefix" > .artifacts/$filename
+      - name: Install package and test
+        shell: bash -l {0}
+        run: |
+          pip install -e .
+          pytest --cache-clear
+      - name: Upload Coverage
+        shell: bash -l {0}
+        run: |
+          pip install coveralls && coveralls --service=github
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+          COVERALLS_FLAG_NAME: ${{ matrix.python-version }}
+          COVERALLS_PARALLEL: true
+      - name: Create wheel and dist package
+        shell: bash -l {0}
+        run: |
+          git status
+          pip install setuptools_scm
+          if [ ${{ matrix.os }} == "windows-latest" ]
+          then
+            # build whls on windows
+            pip install wheel
+            python setup.py bdist_wheel --dist-dir .artifacts/dist
+          else
+            # build dist on linux
+            python setup.py sdist --dist-dir .artifacts/dist
+          fi
+          ls .artifacts/dist
+      - name: Upload Artifacts
+        uses: actions/upload-artifact@v2
+        with:
+          name: Artifacts
+          path: .artifacts/*
+  coveralls:
+    name: Submit Coveralls 👚
+    needs: build
+    runs-on: ubuntu-latest
+    container: python:3-slim
+    steps:
+      - name: Finished
+        run: |
+          pip3 install --upgrade coveralls && coveralls --service=github --finish
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  publish:
+    name: Upload to PyPI
+    if: |
+      startsWith(github.ref, 'refs/tags/v') &&
+      startsWith(github.repository, 'TUW-GEO')
+    needs: build
+    runs-on: ubuntu-latest
+    steps:
+      - name: Print environment variables
+        run: |
+          echo "GITHUB_REF = $GITHUB_REF"
+          echo "GITHUB_REPOSITORY = $GITHUB_REPOSITORY"
+      - name: Download Artifacts
+        uses: actions/download-artifact@v2
+      - name: Display downloaded files
+        run: ls -aR
+      - name: Upload to PyPI
+        uses: pypa/gh-action-pypi-publish@v1.4.1
+        with:
+          skip_existing: true
+          verbose: true
+          verify_metadata: true
+          packages_dir: Artifacts/dist/
+          user: __token__
+          password: ${{ secrets.PYPI_API_TOKEN }} # this needs to be uploaded to github actions secrets

.gitignore

@@ -42,3 +42,4 @@ cover/*
 MANIFEST
 
 */local_scripts/*
+.artifacts/*

.readthedocs.yml

@@ -3,10 +3,11 @@ version: 2
 sphinx:
   configuration: docs/conf.py
 
-formats:
-  - pdf
+conda:
+  environment: environment.yml
 
 python:
   version: 3.7
   install:
-    - requirements: docs/requirements.txt
+    - method: pip
+      path: .

CHANGELOG.rst

@@ -7,6 +7,20 @@ Unreleased
 
 -
 
+Version 0.7.0
+=============
+
+- Test download function with real data.
+- Support GLDAS EP
+- GHA to replace travis
+- Update docs
+- Update Formatting
+
+Version 0.6.1
+=============
+
+- Travis upload release to pypi
+
 Version 0.6
 ===========
 

README.rst

@@ -2,8 +2,8 @@
 gldas
 =====
 
-.. image:: https://travis-ci.org/TUW-GEO/gldas.svg?branch=master
-    :target: https://travis-ci.org/TUW-GEO/gldas
+.. image:: https://github.com/TUW-GEO/gldas/workflows/Automated%20Tests/badge.svg?branch=master
+   :target: https://github.com/TUW-GEO/gldas/actions
 
 .. image:: https://coveralls.io/repos/github/TUW-GEO/gldas/badge.svg?branch=master
    :target: https://coveralls.io/github/TUW-GEO/gldas?branch=master
@@ -43,7 +43,7 @@ commands:
 
 .. code-block:: shell
 
-  conda create -n gldas python=3.6 # or any other supported python version
+  conda create -n gldas python=3.9 # or any other supported python version
   source activate gldas
 
 .. code-block:: shell
@@ -66,23 +66,6 @@ format (reading, time series creation) and GLDAS Noah data version 2.0 and versi
 It should be easy to extend the package to support other GLDAS based products.
 This will be done as need arises.
 
-Downloading Products
-====================
-
-In order to download GLDAS NOAH products you have to register an account with
-NASA's Earthdata portal. Instructions can be found `here
-<http://disc.sci.gsfc.nasa.gov/registration/registration-for-data-access>`_.
-
-After that you can use the command line program ``gldas_download``.
-
-.. code::
-
-   mkdir ~/workspace/gldas_data
-   gldas_download ~/workspace/gldas_data
-
-would download GLDAS Noah version 2.0 in 0.25 degree sampling into the folder
-``~/workspace/gldas_data``. For more options run ``gldas_download -h``.
-
 Contribute
 ==========