Use compas docker image to avoid linux installs on ci

[avivajpeyi]

The linux installs take up to 4 min... Maybe we can use the COMPAS docker-container to speed things up?
Requires #1426

[avivajpeyi]

Ok for future ref, the clean way fails

    name: Build COMPAS
    runs-on: ubuntu-22.04
    container: 
      image: teamcompas/compas:latest
      options: --user root  

with error

>> Run actions/checkout@v4
..
/usr/bin/docker exec d06cab306f0aa228341e70597fec289684cbb920669bdbb9620aeff11937979d sh -c "cat /etc/release | grep ^ID"
/e/node20/bin/node: /lib/x86_64-linux-gnu/libc.so.6: version `GLIBC_2.28' not found (required by /e/node20/bin/node)

This means that the teamcompas/compas:latest container has an older version of glibc that's incompatible with GitHub Actions' Node.js .... What the heck.

But we can do something hacky instead:

run: |
          echo "Building COMPAS using teamcompas/compas:latest container..."
          docker run --rm \
            -v ${{ github.workspace }}:/workspace \
            -w /workspace \
            teamcompas/compas:latest \
            sh -c "cd src && make clean 2>/dev/null || echo 'No existing build to clean' && make -j \$(nproc) -f Makefile && ./COMPAS -v"

This basically gets the compas image and builds using the image, rather than using the image as a container.
Ie just uses the installs present in the COMPAS image, but then still builds on the host.

Kindof like a module load on slurm.

The reason we'd want this is to speed up the CI -- now we wont need to spend the 3 min doing Linux installs.

[avivajpeyi]

Darn! So close!

The COMPAS build works

COMPAS v03.23.01 (gsl v2.4, boost v1.65.1, HDF5 v1.10.0)
Compact Object Mergers: Population Astrophysics and Statistics
by Team COMPAS (http://compas.science/index.html)
A binary star simulator

Go to https://compas.readthedocs.io/en/latest/index.html for the online documentation
Check https://compas.readthedocs.io/en/latest/pages/whats-new.html to see what's new in the latest release

COMPAS build completed successfully!

But then i think we're still missing some libraires (the hdf5 lib) when we run COMPAS detailed plotter:

Run export COMPAS_EXECUTABLE_PATH=/home/runner/work/COMPAS/COMPAS/src/COMPAS
Contents of run.sh:
#bin/bash
echo ">>>  GENERATING TEST COMPAS DATA <<<"
# if $COMPAS_EXECUTABLE_PATH not set, set to ../../src/COMPAS
COMPAS_EXECUTABLE_PATH=${COMPAS_EXECUTABLE_PATH:-../../src/COMPAS}
$COMPAS_EXECUTABLE_PATH \
  -n 2 \
  --initial-mass-1 35 \
  --initial-mass-2 31 \
  -a 3.5 \
  --random-seed 0 \
  --metallicity 0.001 \
  --detailed-output \
  > compas_run.log
cat compas_run.log
echo "Generating detailed evolution plot"
compas_plot_detailed_evolution "./COMPAS_Output/Detailed_Output/BSE_Detailed_Output_0.h5" --dont-show >> detailed_evolution.log
echo "Out files:"
ls -l
echo ">>> DONE <<<"
Running COMPAS example...
>>>  GENERATING TEST COMPAS DATA <<<
/home/runner/work/COMPAS/COMPAS/src/COMPAS: error while loading shared libraries: libhdf5_serial.so.100: cannot open shared object file: No such file or directory
Generating detailed evolution plot
Traceback (most recent call last):
  File "/opt/hostedtoolcache/Python/3.9.23/x64/bin/compas_plot_detailed_evolution", line 7, in <module>
    sys.exit(main())
  File "/home/runner/work/COMPAS/COMPAS/compas_python_utils/detailed_evolution_plotter/plot_detailed_evolution.py", line 28, in main
    run_main_plotter(args.data_path, outdir=args.outdir, show=args.dont_show, use_latex=True)
  File "/home/runner/work/COMPAS/COMPAS/compas_python_utils/detailed_evolution_plotter/plot_detailed_evolution.py", line 34, in run_main_plotter
    RawData = h5.File(data_path, 'r')
  File "/opt/hostedtoolcache/Python/3.9.23/x64/lib/python3.9/site-packages/h5py/_hl/files.py", line 564, in __init__
    fid = make_fid(name, mode, userblock_size, fapl, fcpl, swmr=swmr)
  File "/opt/hostedtoolcache/Python/3.9.23/x64/lib/python3.9/site-packages/h5py/_hl/files.py", line 238, in make_fid
    fid = h5f.open(name, flags, fapl=fapl)
  File "h5py/_objects.pyx", line 56, in h5py._objects.with_phil.wrapper
  File "h5py/_objects.pyx", line 57, in h5py._objects.with_phil.wrapper
  File "h5py/h5f.pyx", line 102, in h5py.h5f.open
FileNotFoundError: [Errno 2] Unable to synchronously open file (unable to open file: name = './COMPAS_Output/Detailed_Output/BSE_Detailed_Output_0.h5', errno = 2, error message = 'No such file or directory', flags = 0, o_flags = 0)
Out files:
total 8
-rw-r--r-- 1 runner docker 424 Aug 19 08:00 README.md
-rw-r--r-- 1 runner docker   0 Aug 19 08:06 compas_run.log
-rw-r--r-- 1 runner docker   0 Aug 19 08:06 detailed_evolution.log
-rwxr-xr-x 1 runner docker 595 Aug 19 08:00 run.sh
>>> DONE <<<

rror while loading shared libraries: libhdf5_serial.so.100: cannot open shared object file: No such file or directory

[avivajpeyi]

@jeffriley , any tips? Im guessing its cause we might need the docker env to run compas as well?

[avivajpeyi]

Arrrghh, that was working, but now its an issue with the image having an old python...

=== Installing Python dependencies ===
Collecting pip
  Downloading https://files.pythonhosted.org/packages/a4/6d/6463d49a933f547439d6b5b98b46af8742cc03ae83543e4d7688c2420f8b/pip-21.3.1-py3-none-any.whl (1.7MB)
Installing collected packages: pip
  Found existing installation: pip 9.0.1
    Not uninstalling pip at /usr/lib/python3/dist-packages, outside environment /usr
Successfully installed pip-21.3.1
Obtaining file:///workspace
  Preparing metadata (setup.py): started
  Preparing metadata (setup.py): finished with status 'error'
  ERROR: Command errored out with exit status 1:
   command: /usr/bin/python3 -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/workspace/setup.py'"'"'; __file__='"'"'/workspace/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' egg_info --egg-base /tmp/pip-pip-egg-info-luksy427
       cwd: /workspace/
  Complete output (1 lines):
  Python < 3.8 is not supported, aborting setup

[github-actions]

✅ COMPAS Build Successful!

Item	Value
Commit	eca86c8
Logs	View workflow

📊 Detailed Evolution Plot

Click to view evolution plot

---

_{Generated by COMPAS CI}

[github-actions]

✅ COMPAS Build Successful!

Item	Value
Commit	2b40b40
Logs	View workflow

Detailed Evolution Plot

Click to view evolution plot

---

_{Generated by COMPAS CI}

[avivajpeyi]

Using containers speeds up the CI by ~4 min!

[ilyamandel]

Hi @avivajpeyi ,
Happy to approve, leave it to you to decide when it's appropriate to pull into dev.

[ilyamandel]

@avivajpeyi -- a ping that this has been approved and is waiting for you to decide whether to pull it.

[avivajpeyi]

Ah woops! sorry @ilyamandel .

Ill double-check this and merge it tomorrow if it makes sense

[github-actions]

✅ COMPAS Build Successful!

Item	Value
Commit	88dcae8
Logs	View workflow

📊 Detailed Evolution Plot

Click to view evolution plot

---

_{Generated by COMPAS CI with CML}

[github-actions]

✅ COMPAS Build Successful!

Item	Value
Commit	7cf9306
Logs	View workflow

Detailed Evolution Plot

Click to view evolution plot

---

_{Generated by COMPAS CI}