update #963
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: update | |
| on: | |
| # push: | |
| workflow_dispatch: | |
| schedule: | |
| - cron: "0 5 * * *" | |
| jobs: | |
| build: | |
| runs-on: ubuntu-20.04 | |
| env: | |
| S3_FOLDER: covid-19-excess-deaths-tracker | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_VERSION: 4.0.3 | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v2 | |
| - name: Set up R | |
| uses: r-lib/actions/setup-r@12d5b556c504a4be89f0dc9779e0de65bf0cfa44 | |
| with: | |
| r-version: ${{ env.R_VERSION }} | |
| - name: Set up Ubuntu packages | |
| run: sudo apt-get install libcurl4-openssl-dev libharfbuzz-dev libfribidi-dev | |
| - name: Cache R packages | |
| id: cache | |
| uses: actions/cache@v2 | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: r-v1-${{ env.R_VERSION }} | |
| restore-keys: r-v1 | |
| - name: Install packages | |
| #if: steps.cache.outputs.cache-hit != 'true' | |
| run: | | |
| install.packages(c( | |
| "tidyverse", | |
| "readxl", | |
| "data.table", | |
| "lubridate", | |
| "aweek", dependencies = T | |
| )) | |
| shell: Rscript {0} | |
| - name: Run cleaning script | |
| run: | | |
| source('scripts/cleaning_script.R') | |
| shell: Rscript {0} | |
| - name: Run excess deaths script | |
| run: | | |
| source('scripts/excess_deaths_script.R') | |
| shell: Rscript {0} | |
| - name: Run interactive script | |
| run: | | |
| source('scripts/interactive_script.R') | |
| shell: Rscript {0} | |
| - name: Commit files | |
| run: | | |
| git config --local user.email "action@github.com" | |
| git config --local user.name "GitHub Action" | |
| git commit --allow-empty -m "Data auto-update" -a | |
| - name: Push changes | |
| uses: ad-m/github-push-action@8407731efefc0d8f72af254c74276b7a90be36e1 | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| branch: ${{ github.ref }} | |
| - name: Upload to S3 | |
| run: | | |
| aws s3 sync ./output-data/excess-deaths s3://"$AWS_S3_BUCKET"/"$S3_FOLDER" --acl public-read --cache-control "public,max-age=300,proxy-revalidate" | |
| aws s3 sync ./output-data/interactive s3://"$AWS_S3_BUCKET"/"$S3_FOLDER" --acl public-read --cache-control "public,max-age=300,proxy-revalidate" | |
| env: | |
| S3_FOLDER: ${{ env.S3_FOLDER }} | |
| AWS_S3_BUCKET: ${{ secrets.AWS_S3_BUCKET }} | |
| AWS_ACCESS_KEY_ID: ${{ secrets.AWS_ACCESS_KEY_ID }} | |
| AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_SECRET_ACCESS_KEY }} | |
| AWS_REGION: 'us-east-1' | |
| - name: Create Cloudfront invalidation | |
| run: | | |
| aws cloudfront create-invalidation --distribution-id "$AWS_CLOUDFRONT_DISTRIBUTION_ID" --paths "/$S3_FOLDER/*" | |
| env: | |
| S3_FOLDER: ${{ env.S3_FOLDER }} | |
| AWS_CLOUDFRONT_DISTRIBUTION_ID: ${{ secrets.AWS_CLOUDFRONT_DISTRIBUTION_ID }} | |
| AWS_ACCESS_KEY_ID: ${{ secrets.AWS_ACCESS_KEY_ID }} | |
| AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_SECRET_ACCESS_KEY }} | |
| AWS_REGION: 'us-east-1' |