tests(polychem): update snapshots for new miette

TheLostLambda · Mar 27, 2024 · 23a4093 · 23a4093
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diff --git a/...ychem/src/atoms/snapshots/polychem__atoms__atomic_database__tests__decimal_from_bool.snap b/...ychem/src/atoms/snapshots/polychem__atoms__atomic_database__tests__decimal_from_bool.snap
@@ -5,7 +5,8 @@ expression: out
 ---
   × error parsing KDL
 
-Error:   × expected a decimal number, found boolean
+Error: 
+  × expected a decimal number, found boolean
    ╭─[test:1:10]
  1 │ lossless true
    ·          ──┬─

diff --git a/...em/src/atoms/snapshots/polychem__atoms__atomic_database__tests__decimal_illegal_type.snap b/...em/src/atoms/snapshots/polychem__atoms__atomic_database__tests__decimal_illegal_type.snap
@@ -5,7 +5,8 @@ expression: out
 ---
   × error parsing KDL
 
-Error:   × no type for Decimal, found pi
+Error: 
+  × no type for Decimal, found pi
    ╭─[test:1:10]
  1 │ lossless (pi)3.14
    ·          ──┬─

diff --git a/...c/atoms/snapshots/polychem__atoms__atomic_database__tests__decimal_lack_of_precision.snap b/...c/atoms/snapshots/polychem__atoms__atomic_database__tests__decimal_lack_of_precision.snap
@@ -5,7 +5,8 @@ expression: out
 ---
   × error parsing KDL
 
-Error:   × an error occured during scalar conversion
+Error: 
+  × an error occured during scalar conversion
   ╰─▶   × Scale exceeds the maximum precision allowed: 42 > 28
 
    ╭─[test:1:10]

diff --git a/...ychem/src/atoms/snapshots/polychem__atoms__atomic_database__tests__decimal_underflow.snap b/...ychem/src/atoms/snapshots/polychem__atoms__atomic_database__tests__decimal_underflow.snap
@@ -5,7 +5,8 @@ expression: out
 ---
   × error parsing KDL
 
-Error:   × an error occured during scalar conversion
+Error: 
+  × an error occured during scalar conversion
   ╰─▶   × Number has a high precision that can not be represented.
 
    ╭─[test:1:10]

diff --git a/...s/snapshots/polychem__atoms__atomic_database__tests__double_lowercase_element_symbol.snap b/...s/snapshots/polychem__atoms__atomic_database__tests__double_lowercase_element_symbol.snap
@@ -5,7 +5,8 @@ expression: out
 ---
   × error parsing KDL
 
-Error:   × an error occured during scalar conversion
+Error: 
+  × an error occured during scalar conversion
   ╰─▶   × expected a single uppercase ASCII letter optionally followed by a
         │ lowercase ASCII letter, got "dt"
 

diff --git a/...s/snapshots/polychem__atoms__atomic_database__tests__double_uppercase_element_symbol.snap b/...s/snapshots/polychem__atoms__atomic_database__tests__double_uppercase_element_symbol.snap
@@ -5,7 +5,8 @@ expression: out
 ---
   × error parsing KDL
 
-Error:   × an error occured during scalar conversion
+Error: 
+  × an error occured during scalar conversion
   ╰─▶   × expected a single uppercase ASCII letter optionally followed by a
         │ lowercase ASCII letter, got "DT"
 

diff --git a/...rc/atoms/snapshots/polychem__atoms__atomic_database__tests__element_without_isotopes.snap b/...rc/atoms/snapshots/polychem__atoms__atomic_database__tests__element_without_isotopes.snap
@@ -5,7 +5,8 @@ expression: out
 ---
   × error parsing KDL
 
-Error:   × at least one child node `isotope` is required
+Error: 
+  × at least one child node `isotope` is required
    ╭─[test:1:1]
  1 │ ╭─▶ D "Deuterium" {
  2 │ │     // isotope 2 2.01410177812 1

diff --git a/...rc/atoms/snapshots/polychem__atoms__atomic_database__tests__lowercase_element_symbol.snap b/...rc/atoms/snapshots/polychem__atoms__atomic_database__tests__lowercase_element_symbol.snap
@@ -5,7 +5,8 @@ expression: out
 ---
   × error parsing KDL
 
-Error:   × an error occured during scalar conversion
+Error: 
+  × an error occured during scalar conversion
   ╰─▶   × expected a single uppercase ASCII letter optionally followed by a
         │ lowercase ASCII letter, got "d"
 

diff --git a/...oms/snapshots/polychem__atoms__atomic_database__tests__multiple_char_particle_symbol.snap b/...oms/snapshots/polychem__atoms__atomic_database__tests__multiple_char_particle_symbol.snap
@@ -5,7 +5,8 @@ expression: out
 ---
   × error parsing KDL
 
-Error:   × an error occured during scalar conversion
+Error: 
+  × an error occured during scalar conversion
   ╰─▶   × expected a single lowercase ASCII letter, got "pr"
 
    ╭─[test:1:1]

diff --git a/...c/atoms/snapshots/polychem__atoms__atomic_database__tests__three_char_element_symbol.snap b/...c/atoms/snapshots/polychem__atoms__atomic_database__tests__three_char_element_symbol.snap
@@ -5,7 +5,8 @@ expression: out
 ---
   × error parsing KDL
 
-Error:   × an error occured during scalar conversion
+Error: 
+  × an error occured during scalar conversion
   ╰─▶   × expected a single uppercase ASCII letter optionally followed by a
         │ lowercase ASCII letter, got "Deu"
 

diff --git a/...c/atoms/snapshots/polychem__atoms__atomic_database__tests__uppercase_particle_symbol.snap b/...c/atoms/snapshots/polychem__atoms__atomic_database__tests__uppercase_particle_symbol.snap
@@ -5,7 +5,8 @@ expression: out
 ---
   × error parsing KDL
 
-Error:   × an error occured during scalar conversion
+Error: 
+  × an error occured during scalar conversion
   ╰─▶   × expected a single lowercase ASCII letter, got "P"
 
    ╭─[test:1:1]

diff --git a/.../atoms/snapshots/polychem__atoms__chemical_composition__tests__composition_errors-11.snap b/.../atoms/snapshots/polychem__atoms__chemical_composition__tests__composition_errors-11.snap
@@ -17,8 +17,7 @@ expression: out
          ·  ╰── expected non-zero
          ╰────
         help: a 0 value doesn't make sense here, if you've mistakenly included
-      a
-              leading zero, like NH02, try just NH2 instead
+              a leading zero, like NH02, try just NH2 instead
 
    ╭────
  1 │ [0H2O 

diff --git a/...c/atoms/snapshots/polychem__atoms__chemical_composition__tests__composition_errors-2.snap b/...c/atoms/snapshots/polychem__atoms__chemical_composition__tests__composition_errors-2.snap
@@ -10,7 +10,7 @@ expression: out
   │   
   ╰─▶   × the element "Yh" could not be found in the supplied atomic database
         help: double-check for typos, or add a new entry to the atomic
-      database
+              database
 
    ╭────
  1 │ NH2[99Tc]YhO4 

diff --git a/.../atoms/snapshots/polychem__atoms__chemical_composition__tests__composition_errors-20.snap b/.../atoms/snapshots/polychem__atoms__chemical_composition__tests__composition_errors-20.snap
@@ -7,18 +7,22 @@ expression: out
   │ particle offset), or a standalone particle offset
   ╰─▶   × attempted 2 parse branches unsuccessfully
 
-      Error:   × expected an element (like Au) or an isotope (like [15N])
-      optionally
+      Error:
+        × expected an element (like Au) or an isotope (like [15N]) optionally
         │ followed by a number
         ╰─▶   × attempted 2 parse branches unsuccessfully
 
-            Error:   × expected an element symbol
+            Error:
+              × expected an element symbol
               ╰─▶   × expected an uppercase ASCII letter
 
-            Error:   × expected '[' to open isotope brackets
 
-      Error:   × expected a particle (like p or e), optionally preceded by
-      a number
+            Error:
+              × expected '[' to open isotope brackets
+
+
+      Error:
+        × expected a particle (like p or e), optionally preceded by a number
         ├─▶   × expected a particle symbol
         │
         ╰─▶   × expected a lowercase ASCII letter

diff --git a/.../atoms/snapshots/polychem__atoms__chemical_composition__tests__composition_errors-21.snap b/.../atoms/snapshots/polychem__atoms__chemical_composition__tests__composition_errors-21.snap
@@ -9,8 +9,7 @@ expression: out
   │     │ followed by a number
   │   
   ╰─▶   × no natural abundance data could be found for Technetium (Tc), though
-      the
-        │ following isotopes were found: [97, 98, 99]
+        │ the following isotopes were found: [97, 98, 99]
         help: consider explicitly selecting the isotope to be used in mass
               calculations — e.g. [97Tc]
 

diff --git a/.../atoms/snapshots/polychem__atoms__chemical_composition__tests__composition_errors-22.snap b/.../atoms/snapshots/polychem__atoms__chemical_composition__tests__composition_errors-22.snap
@@ -9,8 +9,7 @@ expression: out
   │     │ followed by a number
   │   
   ╰─▶   × no natural abundance data could be found for Polonium (Po), though
-      the
-        │ following isotopes were found: [209, 210]
+        │ the following isotopes were found: [209, 210]
         help: consider explicitly selecting the isotope to be used in mass
               calculations — e.g. [209Po]
 

diff --git a/...c/atoms/snapshots/polychem__atoms__chemical_composition__tests__composition_errors-3.snap b/...c/atoms/snapshots/polychem__atoms__chemical_composition__tests__composition_errors-3.snap
@@ -9,7 +9,7 @@ expression: out
   │   
   ╰─▶   × the particle "m" could not be found in the supplied atomic database
         help: double-check for typos, or add a new entry to the atomic
-      database
+              database
 
    ╭────
  1 │ NH2[99Tc]O4-8m+2p 

diff --git a/...c/atoms/snapshots/polychem__atoms__chemical_composition__tests__composition_errors-4.snap b/...c/atoms/snapshots/polychem__atoms__chemical_composition__tests__composition_errors-4.snap
@@ -7,18 +7,22 @@ expression: out
   │ particle offset), or a standalone particle offset
   ╰─▶   × attempted 2 parse branches unsuccessfully
 
-      Error:   × expected an element (like Au) or an isotope (like [15N])
-      optionally
+      Error:
+        × expected an element (like Au) or an isotope (like [15N]) optionally
         │ followed by a number
         ╰─▶   × attempted 2 parse branches unsuccessfully
 
-            Error:   × expected an element symbol
+            Error:
+              × expected an element symbol
               ╰─▶   × expected an uppercase ASCII letter
 
-            Error:   × expected '[' to open isotope brackets
 
-      Error:   × expected a particle (like p or e), optionally preceded by
-      a number
+            Error:
+              × expected '[' to open isotope brackets
+
+
+      Error:
+        × expected a particle (like p or e), optionally preceded by a number
         ├─▶   × expected a particle symbol
         │
         ╰─▶   × expected a lowercase ASCII letter

diff --git a/...c/atoms/snapshots/polychem__atoms__chemical_composition__tests__composition_errors-5.snap b/...c/atoms/snapshots/polychem__atoms__chemical_composition__tests__composition_errors-5.snap
@@ -7,18 +7,22 @@ expression: out
   │ particle offset), or a standalone particle offset
   ╰─▶   × attempted 2 parse branches unsuccessfully
 
-      Error:   × expected an element (like Au) or an isotope (like [15N])
-      optionally
+      Error:
+        × expected an element (like Au) or an isotope (like [15N]) optionally
         │ followed by a number
         ╰─▶   × attempted 2 parse branches unsuccessfully
 
-            Error:   × expected an element symbol
+            Error:
+              × expected an element symbol
               ╰─▶   × expected an uppercase ASCII letter
 
-            Error:   × expected '[' to open isotope brackets
 
-      Error:   × expected a particle (like p or e), optionally preceded by
-      a number
+            Error:
+              × expected '[' to open isotope brackets
+
+
+      Error:
+        × expected a particle (like p or e), optionally preceded by a number
         ├─▶   × expected a particle symbol
         │
         ╰─▶   × expected a lowercase ASCII letter

diff --git a/...c/atoms/snapshots/polychem__atoms__chemical_composition__tests__composition_errors-6.snap b/...c/atoms/snapshots/polychem__atoms__chemical_composition__tests__composition_errors-6.snap
@@ -7,18 +7,22 @@ expression: out
   │ particle offset), or a standalone particle offset
   ╰─▶   × attempted 2 parse branches unsuccessfully
 
-      Error:   × expected an element (like Au) or an isotope (like [15N])
-      optionally
+      Error:
+        × expected an element (like Au) or an isotope (like [15N]) optionally
         │ followed by a number
         ╰─▶   × attempted 2 parse branches unsuccessfully
 
-            Error:   × expected an element symbol
+            Error:
+              × expected an element symbol
               ╰─▶   × expected an uppercase ASCII letter
 
-            Error:   × expected '[' to open isotope brackets
 
-      Error:   × expected a particle (like p or e), optionally preceded by
-      a number
+            Error:
+              × expected '[' to open isotope brackets
+
+
+      Error:
+        × expected a particle (like p or e), optionally preceded by a number
         ├─▶   × expected a particle symbol
         │
         ╰─▶   × expected a lowercase ASCII letter

diff --git a/...c/atoms/snapshots/polychem__atoms__chemical_composition__tests__composition_errors-7.snap b/...c/atoms/snapshots/polychem__atoms__chemical_composition__tests__composition_errors-7.snap
@@ -10,8 +10,7 @@ expression: out
   │   
   ╰─▶   × counts cannot start with 0
         help: a 0 value doesn't make sense here, if you've mistakenly included
-      a
-              leading zero, like NH02, try just NH2 instead
+              a leading zero, like NH02, try just NH2 instead
 
    ╭────
  1 │ C3H0N4 

diff --git a/...c/atoms/snapshots/polychem__atoms__chemical_composition__tests__composition_errors-8.snap b/...c/atoms/snapshots/polychem__atoms__chemical_composition__tests__composition_errors-8.snap
@@ -10,8 +10,7 @@ expression: out
   │   
   ╰─▶   × counts cannot start with 0
         help: a 0 value doesn't make sense here, if you've mistakenly included
-      a
-              leading zero, like NH02, try just NH2 instead
+              a leading zero, like NH02, try just NH2 instead
 
    ╭────
  1 │ C3H06N4 

diff --git a/...src/atoms/snapshots/polychem__atoms__chemical_composition__tests__composition_errors.snap b/...src/atoms/snapshots/polychem__atoms__chemical_composition__tests__composition_errors.snap
@@ -9,10 +9,10 @@ expression: out
   │     │ followed by a number
   │   
   ╰─▶   × the isotope "Tc-100" could not be found in the supplied atomic
-      database,
-        │ though the following Technetium isotopes were found: [97, 98, 99]
+        │ database, though the following Technetium isotopes were found: [97,
+        │ 98, 99]
         help: double-check for typos, or add a new entry to the atomic
-      database
+              database
 
    ╭────
  1 │ NH2[100Tc]O4 

diff --git a/crates/polychem/src/polymerizer/snapshots/polychem__polymerizer__tests__bond-2.snap b/crates/polychem/src/polymerizer/snapshots/polychem__polymerizer__tests__bond-2.snap
@@ -7,5 +7,4 @@ expression: out
   │ residue 2 (Alanine) due to an issue with the donor
   ╰─▶   × residue 1 does not belong to the current polymer
         help: the referenced residue was likely created by a different
-      Polymerizer
-              instance
+              Polymerizer instance
diff --git a/crates/polychem/src/polymerizer/snapshots/polychem__polymerizer__tests__bond_groups-2.snap b/crates/polychem/src/polymerizer/snapshots/polychem__polymerizer__tests__bond_groups-2.snap
@@ -6,4 +6,4 @@ expression: out
   × failed to form "Peptide" bond between residue 2 (Alanine) and residue 3
   │ (N-Acetylglucosamine) due to an issue with the acceptor
   ╰─▶   × the functional group "Amino" at="N-Terminal" does not exist on
-      residue 3
+        │ residue 3
diff --git a/crates/polychem/src/polymerizer/snapshots/polychem__polymerizer__tests__bond_groups.snap b/crates/polychem/src/polymerizer/snapshots/polychem__polymerizer__tests__bond_groups.snap
@@ -6,5 +6,4 @@ expression: out
   × failed to form "Stem" bond between residue 1 (N-Acetylmuramic Acid) and
   │ residue 2 (Alanine) due to an issue with the donor
   ╰─▶   × the functional group "Carboxyl" at="Lactyl Ether" of residue 1 was
-      already
-        │ a donor, but must be free
+        │ already a donor, but must be free
diff --git a/...merizer/snapshots/polychem__polymerizer__tests__find_multiple_specific_free_groups-4.snap b/...merizer/snapshots/polychem__polymerizer__tests__find_multiple_specific_free_groups-4.snap
@@ -5,6 +5,9 @@ expression: out
 ---
   × failed to find multiple of the requested free groups
 
-Error:   × the functional group "Hydroxyl" at="Nonreducing End" of residue 1 was
+Error: 
+  × the functional group "Hydroxyl" at="Nonreducing End" of residue 1 was
   │ already an acceptor, but must be free
-Error:   × the functional group "Amino" at="N-Terminal" does not exist on residue 1
+
+Error: 
+  × the functional group "Amino" at="N-Terminal" does not exist on residue 1
diff --git a/crates/polychem/src/polymerizer/snapshots/polychem__polymerizer__tests__modify_group-2.snap b/crates/polychem/src/polymerizer/snapshots/polychem__polymerizer__tests__modify_group-2.snap
@@ -7,5 +7,4 @@ expression: out
   │ Acetylmuramic Acid)
   ╰─▶   × residue 1 does not belong to the current polymer
         help: the referenced residue was likely created by a different
-      Polymerizer
-              instance
+              Polymerizer instance
diff --git a/crates/polychem/src/polymerizer/snapshots/polychem__polymerizer__tests__modify_group-3.snap b/crates/polychem/src/polymerizer/snapshots/polychem__polymerizer__tests__modify_group-3.snap
@@ -6,5 +6,4 @@ expression: out
   × failed to apply the modification O-Acetylation (Ac) to residue 1 (N-
   │ Acetylmuramic Acid)
   ╰─▶   × expected a target matching "Hydroxyl" at="6-Position", got
-      "Hydroxyl"
-        │ at="Reducing End" of="N-Acetylmuramic Acid"
+        │ "Hydroxyl" at="Reducing End" of="N-Acetylmuramic Acid"
diff --git a/crates/polychem/src/polymerizer/snapshots/polychem__polymerizer__tests__modify_group.snap b/crates/polychem/src/polymerizer/snapshots/polychem__polymerizer__tests__modify_group.snap
@@ -6,5 +6,4 @@ expression: out
   × failed to apply the modification 1,6-Anhydro (Anh) to residue 1 (N-
   │ Acetylmuramic Acid)
   ╰─▶   × the functional group "Hydroxyl" at="Reducing End" of residue 1 was
-      already
-        │ modified, but must be free
+        │ already modified, but must be free
diff --git a/crates/polychem/src/polymerizer/snapshots/polychem__polymerizer__tests__modify_groups-2.snap b/crates/polychem/src/polymerizer/snapshots/polychem__polymerizer__tests__modify_groups-2.snap
@@ -7,5 +7,4 @@ expression: out
   │ Acetylmuramic Acid)
   ╰─▶   × expected a target matching "Hydroxyl" at="Reducing End" of="N-
         │ Acetylmuramic Acid", got "Hydroxyl" at="6-Position" of="N-
-      Acetylmuramic
-        │ Acid"
+        │ Acetylmuramic Acid"
diff --git a/crates/polychem/src/polymerizer/snapshots/polychem__polymerizer__tests__modify_groups-3.snap b/crates/polychem/src/polymerizer/snapshots/polychem__polymerizer__tests__modify_groups-3.snap
@@ -7,11 +7,11 @@ expression: out
   │ Acetylmuramic Acid)
   ╰─▶   × failed to find multiple of the requested free groups
 
-      Error:   × the functional group "Hydroxyl" at="Reducing End" of residue
-      1 was already
-        │ modified, but must be free
-      Error:   × expected a target matching "Hydroxyl" at="Reducing
-      End" of="N-
+      Error:
+        × the functional group "Hydroxyl" at="Reducing End" of residue 1 was
+        │ already modified, but must be free
+
+      Error:
+        × expected a target matching "Hydroxyl" at="Reducing End" of="N-
         │ Acetylmuramic Acid", got "Hydroxyl" at="6-Position" of="N-
-      Acetylmuramic
-        │ Acid"
+        │ Acetylmuramic Acid"