Release Notes for v1.0.2

This release marks the reinitialization and cleanup of the repository for the Microtubule Simulation project. The updates introduce refinements to code organization, enhanced documentation, and the incorporation of Fibonacci scaling into quantum coherence simulations.

What’s New
• Reinitialized Repository: A clean history to streamline collaboration and maintenance.
• New Features:
• Added fibonacci_simulation.py to simulate quantum coherence using Fibonacci scaling.
• Refactored and modularized code for clarity and reusability (fibonacci_simulation_refactored.py).
• Enhanced visualization with quantum_coherence_evolution.png showcasing time evolution.
• Updated Documentation:
• Detailed project structure in README.md for ease of use.
• Included usage instructions for running simulations and generating outputs.
• Bug Fixes:
• Addressed directory and file organization issues to align with Git best practices.
• Resolved conflicts with .gitignore and .DS_Store.

1. How to Use:
   Clone the Repository:
   git clone https://github.com/TheonlyqueenAC/Microtubule_Simulation.git
   cd Microtubule_Simulation

2. Install Dependencies:
   pip install -r requirements.txt

3. Run the primary Simulation:
   python fibonacci_simulation.py

4. Generated outputs include:
   • A visual plot: quantum_coherence_evolution.png
   • Logs and intermediate files for further analysis.

Known Issues
• Ensure proper directory paths when running scripts locally.
• For best performance, use Python 3.9 or higher.

Acknowledgments

Special thanks to the AI and IDE tools that facilitated this release. We also extend our gratitude to pioneers in the field of quantum biology and Fibonacci scaling.

v1.0.1 Fibonacci Scaling Update

What's Changed

Changes in v1.0.1

• Added Fibonacci scaling to quantum coherence simulation.
• Improved visualization and probability density calculations.
• Refactored code for enhanced modularity and clarity.

Files Updated

- fibonacci_simulation.py

• README.md

Outputs

• Updated plot: [fibonacci_coherence_evolution.png](![Screenshot 2025-01-04 at 16 29 07](https://github.com/user-attachments/assets/415915c4-5497-4723-91a5-e24d0c4f601b))

Acknowledgments

Special thanks to [contributors] for insightful feedback and enhancements.

• Create LICENSE by @TheonlyqueenAC in #1

New Contributors

• @TheonlyqueenAC made their first contribution in #1

Full Changelog: v1.0.0...v1.0.1

Initial Release

This is the initial release of the Microtubule Simulation project.
Features include:

• Simulation of quantum wave packet dynamics.
• Visualization of wave packet evolution over time.
• Customizable parameters for the simulation.