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@XanthosXanthopoulos
XanthosXanthopoulos committed Aug 1, 2024
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2 changes: 1 addition & 1 deletion docs/documentation/api/TileDBOpenSlide.html
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<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"><head>

<meta charset="utf-8">
<meta name="generator" content="quarto-1.5.55">
<meta name="generator" content="quarto-1.5.56">

<meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">

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2 changes: 1 addition & 1 deletion docs/documentation/api/from_bioimg.html
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<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"><head>

<meta charset="utf-8">
<meta name="generator" content="quarto-1.5.55">
<meta name="generator" content="quarto-1.5.56">

<meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">

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2 changes: 1 addition & 1 deletion docs/documentation/api/index.html
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<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"><head>

<meta charset="utf-8">
<meta name="generator" content="quarto-1.5.55">
<meta name="generator" content="quarto-1.5.56">

<meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">

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8 changes: 6 additions & 2 deletions docs/documentation/api/ome_tiff.OMETiffConverter.html
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<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"><head>

<meta charset="utf-8">
<meta name="generator" content="quarto-1.5.55">
<meta name="generator" content="quarto-1.5.56">

<meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">

Expand Down Expand Up @@ -324,7 +324,7 @@ <h4 class="anchored" data-anchor-id="parameters">Parameters</h4>
</section>
<section id="tiledb.bioimg.converters.ome_tiff.OMETiffConverter.to_tiledb" class="level3">
<h3 class="anchored" data-anchor-id="tiledb.bioimg.converters.ome_tiff.OMETiffConverter.to_tiledb">to_tiledb</h3>
<p><code>bioimg.converters.ome_tiff.OMETiffConverter.to_tiledb(source, output_path, *, level_min=0, tiles=None, tile_scale=1, preserve_axes=False, chunked=False, max_workers=0, exclude_metadata=False, compressor=None, log=None, reader_kwargs=None, pyramid_kwargs=None)</code></p>
<p><code>bioimg.converters.ome_tiff.OMETiffConverter.to_tiledb(source, output_path, *, level_min=0, tiles=None, tile_scale=1, preserve_axes=False, chunked=False, max_workers=0, exclude_metadata=False, experimental_reader=False, experimental_queue_limit=(10, 20), compressor=None, log=None, reader_kwargs=None, pyramid_kwargs=None)</code></p>
<pre><code> Convert an image to a TileDB Group of Arrays, one per level.

:param source: path to the input image or ImageReader object
Expand All @@ -343,6 +343,10 @@ <h3 class="anchored" data-anchor-id="tiledb.bioimg.converters.ome_tiff.OMETiffCo
:param max_workers: Maximum number of threads that can be used for conversion.
Applicable only if chunked=True.
:param exclude_metadata: If true, drop original metadata of the images and exclude them from being ingested.
:param experimental_reader: If true, use the experimental tiff reader optimized for s3 reads.
Experimental feature, use with caution
:param experimental_queue_limit: When using the experimental reader, define the minimum and maximum number of
pending tiles waiting to be written to TileDB.
:param compressor: TileDB compression filter mapping for each level
:param log: verbose logging, defaults to None. Allows passing custom logging.Logger or boolean.
If None or bool=False it initiates an INFO level logging. If bool=True then a logger is instantiated in
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8 changes: 6 additions & 2 deletions docs/documentation/api/ome_zarr.OMEZarrConverter.html
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<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"><head>

<meta charset="utf-8">
<meta name="generator" content="quarto-1.5.55">
<meta name="generator" content="quarto-1.5.56">

<meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">

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</section>
<section id="tiledb.bioimg.converters.ome_zarr.OMEZarrConverter.to_tiledb" class="level3">
<h3 class="anchored" data-anchor-id="tiledb.bioimg.converters.ome_zarr.OMEZarrConverter.to_tiledb">to_tiledb</h3>
<p><code>bioimg.converters.ome_zarr.OMEZarrConverter.to_tiledb(source, output_path, *, level_min=0, tiles=None, tile_scale=1, preserve_axes=False, chunked=False, max_workers=0, exclude_metadata=False, compressor=None, log=None, reader_kwargs=None, pyramid_kwargs=None)</code></p>
<p><code>bioimg.converters.ome_zarr.OMEZarrConverter.to_tiledb(source, output_path, *, level_min=0, tiles=None, tile_scale=1, preserve_axes=False, chunked=False, max_workers=0, exclude_metadata=False, experimental_reader=False, experimental_queue_limit=(10, 20), compressor=None, log=None, reader_kwargs=None, pyramid_kwargs=None)</code></p>
<pre><code> Convert an image to a TileDB Group of Arrays, one per level.

:param source: path to the input image or ImageReader object
Expand All @@ -343,6 +343,10 @@ <h3 class="anchored" data-anchor-id="tiledb.bioimg.converters.ome_zarr.OMEZarrCo
:param max_workers: Maximum number of threads that can be used for conversion.
Applicable only if chunked=True.
:param exclude_metadata: If true, drop original metadata of the images and exclude them from being ingested.
:param experimental_reader: If true, use the experimental tiff reader optimized for s3 reads.
Experimental feature, use with caution
:param experimental_queue_limit: When using the experimental reader, define the minimum and maximum number of
pending tiles waiting to be written to TileDB.
:param compressor: TileDB compression filter mapping for each level
:param log: verbose logging, defaults to None. Allows passing custom logging.Logger or boolean.
If None or bool=False it initiates an INFO level logging. If bool=True then a logger is instantiated in
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8 changes: 6 additions & 2 deletions docs/documentation/api/openslide.OpenSlideConverter.html
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<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"><head>

<meta charset="utf-8">
<meta name="generator" content="quarto-1.5.55">
<meta name="generator" content="quarto-1.5.56">

<meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">

Expand Down Expand Up @@ -324,7 +324,7 @@ <h4 class="anchored" data-anchor-id="parameters">Parameters</h4>
</section>
<section id="tiledb.bioimg.converters.openslide.OpenSlideConverter.to_tiledb" class="level3">
<h3 class="anchored" data-anchor-id="tiledb.bioimg.converters.openslide.OpenSlideConverter.to_tiledb">to_tiledb</h3>
<p><code>bioimg.converters.openslide.OpenSlideConverter.to_tiledb(source, output_path, *, level_min=0, tiles=None, tile_scale=1, preserve_axes=False, chunked=False, max_workers=0, exclude_metadata=False, compressor=None, log=None, reader_kwargs=None, pyramid_kwargs=None)</code></p>
<p><code>bioimg.converters.openslide.OpenSlideConverter.to_tiledb(source, output_path, *, level_min=0, tiles=None, tile_scale=1, preserve_axes=False, chunked=False, max_workers=0, exclude_metadata=False, experimental_reader=False, experimental_queue_limit=(10, 20), compressor=None, log=None, reader_kwargs=None, pyramid_kwargs=None)</code></p>
<pre><code> Convert an image to a TileDB Group of Arrays, one per level.

:param source: path to the input image or ImageReader object
Expand All @@ -343,6 +343,10 @@ <h3 class="anchored" data-anchor-id="tiledb.bioimg.converters.openslide.OpenSlid
:param max_workers: Maximum number of threads that can be used for conversion.
Applicable only if chunked=True.
:param exclude_metadata: If true, drop original metadata of the images and exclude them from being ingested.
:param experimental_reader: If true, use the experimental tiff reader optimized for s3 reads.
Experimental feature, use with caution
:param experimental_queue_limit: When using the experimental reader, define the minimum and maximum number of
pending tiles waiting to be written to TileDB.
:param compressor: TileDB compression filter mapping for each level
:param log: verbose logging, defaults to None. Allows passing custom logging.Logger or boolean.
If None or bool=False it initiates an INFO level logging. If bool=True then a logger is instantiated in
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2 changes: 1 addition & 1 deletion docs/documentation/api/to_bioimg.html
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<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"><head>

<meta charset="utf-8">
<meta name="generator" content="quarto-1.5.55">
<meta name="generator" content="quarto-1.5.56">

<meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">

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2 changes: 1 addition & 1 deletion docs/documentation/examples/OMETiff-Converter-Demo.html
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<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"><head>

<meta charset="utf-8">
<meta name="generator" content="quarto-1.5.55">
<meta name="generator" content="quarto-1.5.56">

<meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">

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2 changes: 1 addition & 1 deletion docs/documentation/examples/OMEZarr-Converter-Demo.html
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<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"><head>

<meta charset="utf-8">
<meta name="generator" content="quarto-1.5.55">
<meta name="generator" content="quarto-1.5.56">

<meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">

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2 changes: 1 addition & 1 deletion docs/documentation/index.html
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<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"><head>

<meta charset="utf-8">
<meta name="generator" content="quarto-1.5.55">
<meta name="generator" content="quarto-1.5.56">

<meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">

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