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Tim Saunders Lab

Here you will find the repositories associated to papers published by Timothy Saunders' team.

More information about the team : Saunders Lab website


2024

Receptor binding and tissue architecture explains the morphogen local-to-global diffusion coefficient transition.
Shiwen Zhu, Yi Ting Loo, Sapthaswaran Veerapathiran, Tricia Y. J. Loo, Bich Ngoc Tran, Cathleen Teh, Jun Zhong, Paul T. Matsudaira, Timothy E Saunders, Thorsten Wohland
Repository

The positioning mechanics of microtubule asters in Drosophila embryo explants.
Jorge de-Carvalho, Sham Tlili, Timothy E. Saunders, Ivo A. Telley
Repository

Long-range formation of the Bicoid gradient requires multiple dynamic modes that spatially vary across the embryo.
Thamarailingam Athilingam, Ashwin V. S. Nelanuthala, Catriona Breen, Narain Karedla, Marco Fritzsche, Thorsten Wohland, Timothy E. Saunders
Repository


2023

Curvature-induced cell rearrangements in biological tissues.
Yuting Lou, Jean-Francois Rupprecht, Sophie Theis, Tetsuya Hiraiwa, Timothy E.Saunders
Repository


2022

Slow muscles guide fast myocyte fusion to ensure robust myotome formation despite the high spatiotemporal stochasticity of fusion events.
Mario A. Mendieta-Serrano, Sunandan Dhar, Boon Heng Ng, Rachna Narayanan, Jorge J.Y. Lee, Hui Ting Ong, Pearlyn Jia Ying Toh, Adrian Röllin, Sudipto Roy, Timothy E. Saunders
Repository

Condensation of the Drosophila nerve cord is oscillatory and depends on coordinated mechanical interactions.
Katerina Karkali, Prabhat Tiwari, Anand Singh, Sham Tlili, Ignasi Jorba, Daniel Navajas, José J.Muñoz, Timothy E.Saunders, Enrique Martin-Blanco
Repository

Popular repositories Loading

  1. CellMet CellMet Public

    3D cell shape analysis from labelled image

    Jupyter Notebook 5 1

  2. CellPacking CellPacking Public

    Forked from sophietheis/CellPacking

    This is flat monolayer simulation package for T1 transition under stress

    Jupyter Notebook

  3. CNS-Paper CNS-Paper Public

    Forked from tes24/CNS-Paper

    For Karkali et al Developmental Cell 2022

    MATLAB

  4. .github .github Public

    Homepage for the presentation of TimSaundersLab

  5. Aster-Repulsion-Codes Aster-Repulsion-Codes Public

    For de-Carvalho et al

    MATLAB

  6. MuscleSeg MuscleSeg Public

    Forked from tes24/MuscleSeg

    Segmentation software for muscle, from Mendieta-Serrano 2022

    Python

Repositories

Showing 7 of 7 repositories
  • CellMet Public

    3D cell shape analysis from labelled image

    TimSaundersLab/CellMet’s past year of commit activity
    Jupyter Notebook 5 GPL-3.0 1 1 0 Updated Nov 18, 2024
  • .github Public

    Homepage for the presentation of TimSaundersLab

    TimSaundersLab/.github’s past year of commit activity
    0 0 0 0 Updated Aug 8, 2024
  • image_based_particle_model Public

    Code for Zhu et al paper

    TimSaundersLab/image_based_particle_model’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Apr 26, 2024
  • Aster-Repulsion-Codes Public

    For de-Carvalho et al

    TimSaundersLab/Aster-Repulsion-Codes’s past year of commit activity
    MATLAB 0 BSD-3-Clause 0 0 0 Updated Feb 21, 2024
  • CellPacking Public Forked from sophietheis/CellPacking

    This is flat monolayer simulation package for T1 transition under stress

    TimSaundersLab/CellPacking’s past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Jan 25, 2024
  • CNS-Paper Public Forked from tes24/CNS-Paper

    For Karkali et al Developmental Cell 2022

    TimSaundersLab/CNS-Paper’s past year of commit activity
    MATLAB 0 CC0-1.0 1 0 0 Updated Jan 23, 2023
  • MuscleSeg Public Forked from tes24/MuscleSeg

    Segmentation software for muscle, from Mendieta-Serrano 2022

    TimSaundersLab/MuscleSeg’s past year of commit activity
    Python 0 1 0 0 Updated Aug 22, 2022

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