Skip to content

TinaXiayanLi/bioinf529-assessment-data

 
 

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

5 Commits
 
 
 
 
 
 

Repository files navigation

bioinf529-assessment-data

This repo contains the data that will be used in your placement assessment. Therefore, the description of the data is as follows:


Description

The data contains four (4) columns:

# Column Description
1 start the starting position of a region
2 end the ending position of a region
3 seq the reference sequence of the region
4 info whether or not the region has an observed variation

The info column is the most crucial part of a given row. If no variant was found within the row's regions of interest, the column will have No_variant as its contents. However, if a variant is found in the region of interest, the contents will be similar to

Variant_<some_number>_<some_letter(s)>

This means that at that position (<some_number>) within the region of interest, a variant (<some_letter(s)>) was found that is different than the original sequence (the sequence found in the seq column).

About

Demo data for Bioinformatics 529 class assessment

Resources

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published

Languages

  • Jupyter Notebook 100.0%