Skip to content

Commit

Permalink
Update OnDemand.md
Browse files Browse the repository at this point in the history
Adds R Studio description.
  • Loading branch information
ikirker authored Sep 18, 2024
1 parent 40a779b commit 3a648b6
Showing 1 changed file with 10 additions and 0 deletions.
10 changes: 10 additions & 0 deletions mkdocs-project-dir/docs/Supplementary/OnDemand.md
Original file line number Diff line number Diff line change
Expand Up @@ -137,3 +137,13 @@ python3 -m ipykernel install --user --name my_env --env LD_LIBRARY_PATH ${LD_LIB
```

You should then be able to select the kernel from the drop-down list in Jupyter.

### R Studio

++"Interactive Apps"++ ➡ ++"R Studio"++

As with the Jupyter Notebook option, this can submit a job that launches an R Studio session on a compute node. It then acts as a proxy to let you access that server from your browser.

The installation of R used for this is quite barebones, for technical reasons: it is expected that users will install their own packages using e.g. `install.packages("dplyr")`.

To keep package installations separate, packages installed from R Studio sessions will be put in your home directory under `~/oodR` by default, instead of `~/R`. This should avoid problems with compiled C, C++, or Fortran parts of R packages.

0 comments on commit 3a648b6

Please sign in to comment.