Moderate release
- Adding fastplong for long reads (they've been going through fastp with some modified flag values)
- Updated fastp to 0.24.0
- Updated busco to 5.8.2-prok-bacteria_odb12_2024-11-14
- Updated multiqc to 1.26
- Updated medaka to 2.0.1 (and uses staphb's container)
Only for UPHL:
- changes where files are located
(There was an attempt to replace medaka with clair3, but the devs ran out of time for this release)