sparseQFCA

sparseQFCA is a registered package for the sparse Quantitative Flux Coupling Analysis. The example data files S.csv and rev.csv are extracted from the core E. coli model.

Usage

certificates, blocked, fctable = QFCA(S, rev)

Inputs

• S: the associated sparse stoichiometric matrix
• rev: the boolean vector with trues corresponding to the reversible reactions

Outputs

• certificates: the fictitious metabolites for the sparse positive certificates
• blocked: the boolean vector with trues corresponding to the blocked reactions
• fctable: the resulting flux coupling matrix

Quick Start

To get started, first run import Pkg; Pkg.add("sparseQFCA") to install the sparseQFCA package, and then see this Jupyter notebook for a demonstration on how to use it.

License

sparseQFCA is distributed under the GNU General Public License v3.0.