Update unit testing #358
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| # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | |
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
| # | |
| # NOTE: This workflow is overkill for most R packages and | |
| # check-standard.yaml is likely a better choice. | |
| # usethis::use_github_action("check-standard") will install it. | |
| on: | |
| push: | |
| branches: [main, master] | |
| pull_request: | |
| branches: [main, master] | |
| name: R-CMD-check-final | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: macOS-latest, r: 'release'} | |
| - {os: windows-latest, r: 'release'} | |
| - {os: macOS-latest, r: 'devel', http-user-agent: 'release'} | |
| - {os: windows-latest, r: 'devel', http-user-agent: 'release'} | |
| # se older ubuntu to maximise backward compatibility | |
| - {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'} | |
| - {os: ubuntu-latest, r: 'release'} | |
| - {os: ubuntu-latest, r: 'oldrel'} | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_KEEP_PKG_SOURCE: yes | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| http-user-agent: ${{ matrix.config.http-user-agent }} | |
| use-public-rspm: true | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: any::rcmdcheck | |
| needs: check | |
| - uses: r-lib/actions/check-r-package@v2 | |
| if: ${{ matrix.config.os == 'ubuntu-latest' && matrix.config.r == 'release' }} | |
| with: | |
| args: 'c("--as-cran", "--no-manual")' | |
| upload-snapshots: false | |
| upload-results: false | |
| check-dir: '"check"' | |
| error-on: '"warning"' | |
| - uses: r-lib/actions/check-r-package@v2 | |
| if: ${{ matrix.config.os != 'ubuntu-latest' || matrix.config.r != 're;ease' }} | |
| with: | |
| upload-snapshots: false | |
| upload-results: false | |
| check-dir: '"check"' | |
| error-on: '"warning"' | |
| - name: Build the package | |
| if: ${{ matrix.config.os == 'ubuntu-latest' && (matrix.config.r == 'release' || matrix.config.r == 'devel') }} | |
| run: R CMD build . | |
| - uses: actions/upload-artifact@v4 | |
| if: ${{ matrix.config.os == 'ubuntu-latest' && (matrix.config.r == 'release' || matrix.config.r == 'devel') }} | |
| with: | |
| name: epiworldR-built-package-${{ matrix.config.os }}-${{ matrix.config.r }} | |
| path: epiworldR_*.tar.gz | |
| retention-days: 7 | |
| epiworldShiny: | |
| runs-on: ubuntu-latest | |
| container: rocker/tidyverse:4.4.0 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| repository: 'UofUEpiBio/epiworldRShiny' | |
| ref: 'main' | |
| fetch-depth: 1 | |
| - name: Install dependencies | |
| run: | | |
| install2.r -n 2 shinyjs shinydashboard DT shinycssloaders plotly | |
| installGithub.r UofUEpiBio/epiworldR@${{ github.sha }} | |
| - name: Check the package | |
| run: | | |
| R CMD build . | |
| R CMD check --no-manual epiworldRShiny_*tar.gz | |
| epiworldRShiny-cran: | |
| runs-on: ubuntu-latest | |
| container: rocker/tidyverse:4.4.0 | |
| steps: | |
| - name: Get epiworldRShiny | |
| run: | | |
| wget \ | |
| https://cran.r-project.org/src/contrib/epiworldRShiny_0.1-0.tar.gz | |
| - name: Install dependencies | |
| run: | | |
| install2.r -n 2 shinyjs shinydashboard DT shinycssloaders plotly | |
| installGithub.r UofUEpiBio/epiworldR@${{ github.sha }} | |
| - name: Check the package | |
| run: | | |
| R CMD check --no-manual epiworldRShiny_*tar.gz |