[60] fix

UofUEpiBio · Nov 13, 2024 · ebd7355 · ebd7355
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diff --git a/README.qmd b/README.qmd
@@ -1,6 +1,6 @@
 ---
 format: gfm
-title: "epiworldpy: Python bindings for epiworld"
+title: "`Epiworldpy`: Python bindings for Epiworld"
 ---
 
 [![](https://github.com/UofUEpiBio/epiworldpy/actions/workflows/pip.yaml/badge.svg)](https://github.com/UofUEpiBio/epiworldpy/actions/workflows/pip.yaml)

diff --git a/docs/_autosummary/epiworldpy.rst b/docs/_autosummary/epiworldpy.rst
@@ -0,0 +1,26 @@
+epiworldpy
+==========
+
+.. automodule:: epiworldpy
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
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diff --git a/docs/_autosummary/generated/epiworldpy.ModelDiffNet.rst b/docs/_autosummary/generated/epiworldpy.ModelDiffNet.rst
@@ -0,0 +1,32 @@
+epiworldpy.ModelDiffNet
+=======================
+
+.. currentmodule:: epiworldpy
+
+.. autoclass:: ModelDiffNet
+
+
+   .. automethod:: __init__
+
+
+   .. rubric:: Methods
+
+   .. autosummary::
+
+      ~ModelDiffNet.__init__
+      ~ModelDiffNet.add_state
+      ~ModelDiffNet.add_tool
+      ~ModelDiffNet.add_virus
+      ~ModelDiffNet.agents_from_edgelist
+      ~ModelDiffNet.agents_smallworld
+      ~ModelDiffNet.get_db
+      ~ModelDiffNet.get_name
+      ~ModelDiffNet.get_states
+      ~ModelDiffNet.print
+      ~ModelDiffNet.run
+
+
+
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+
+
diff --git a/docs/_autosummary/generated/epiworldpy.ModelSEIR.rst b/docs/_autosummary/generated/epiworldpy.ModelSEIR.rst
@@ -0,0 +1,32 @@
+epiworldpy.ModelSEIR
+====================
+
+.. currentmodule:: epiworldpy
+
+.. autoclass:: ModelSEIR
+
+
+   .. automethod:: __init__
+
+
+   .. rubric:: Methods
+
+   .. autosummary::
+
+      ~ModelSEIR.__init__
+      ~ModelSEIR.add_state
+      ~ModelSEIR.add_tool
+      ~ModelSEIR.add_virus
+      ~ModelSEIR.agents_from_edgelist
+      ~ModelSEIR.agents_smallworld
+      ~ModelSEIR.get_db
+      ~ModelSEIR.get_name
+      ~ModelSEIR.get_states
+      ~ModelSEIR.print
+      ~ModelSEIR.run
+
+
+
+
+
+
diff --git a/docs/_autosummary/generated/epiworldpy.ModelSEIRCONN.rst b/docs/_autosummary/generated/epiworldpy.ModelSEIRCONN.rst
@@ -0,0 +1,32 @@
+epiworldpy.ModelSEIRCONN
+========================
+
+.. currentmodule:: epiworldpy
+
+.. autoclass:: ModelSEIRCONN
+
+
+   .. automethod:: __init__
+
+
+   .. rubric:: Methods
+
+   .. autosummary::
+
+      ~ModelSEIRCONN.__init__
+      ~ModelSEIRCONN.add_state
+      ~ModelSEIRCONN.add_tool
+      ~ModelSEIRCONN.add_virus
+      ~ModelSEIRCONN.agents_from_edgelist
+      ~ModelSEIRCONN.agents_smallworld
+      ~ModelSEIRCONN.get_db
+      ~ModelSEIRCONN.get_name
+      ~ModelSEIRCONN.get_states
+      ~ModelSEIRCONN.print
+      ~ModelSEIRCONN.run
+
+
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+
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diff --git a/docs/_autosummary/generated/epiworldpy.ModelSEIRD.rst b/docs/_autosummary/generated/epiworldpy.ModelSEIRD.rst
@@ -0,0 +1,32 @@
+epiworldpy.ModelSEIRD
+=====================
+
+.. currentmodule:: epiworldpy
+
+.. autoclass:: ModelSEIRD
+
+
+   .. automethod:: __init__
+
+
+   .. rubric:: Methods
+
+   .. autosummary::
+
+      ~ModelSEIRD.__init__
+      ~ModelSEIRD.add_state
+      ~ModelSEIRD.add_tool
+      ~ModelSEIRD.add_virus
+      ~ModelSEIRD.agents_from_edgelist
+      ~ModelSEIRD.agents_smallworld
+      ~ModelSEIRD.get_db
+      ~ModelSEIRD.get_name
+      ~ModelSEIRD.get_states
+      ~ModelSEIRD.print
+      ~ModelSEIRD.run
+
+
+
+
+
+
diff --git a/docs/_autosummary/generated/epiworldpy.ModelSIR.rst b/docs/_autosummary/generated/epiworldpy.ModelSIR.rst
@@ -0,0 +1,32 @@
+epiworldpy.ModelSIR
+===================
+
+.. currentmodule:: epiworldpy
+
+.. autoclass:: ModelSIR
+
+
+   .. automethod:: __init__
+
+
+   .. rubric:: Methods
+
+   .. autosummary::
+
+      ~ModelSIR.__init__
+      ~ModelSIR.add_state
+      ~ModelSIR.add_tool
+      ~ModelSIR.add_virus
+      ~ModelSIR.agents_from_edgelist
+      ~ModelSIR.agents_smallworld
+      ~ModelSIR.get_db
+      ~ModelSIR.get_name
+      ~ModelSIR.get_states
+      ~ModelSIR.print
+      ~ModelSIR.run
+
+
+
+
+
+
diff --git a/docs/_autosummary/generated/epiworldpy.ModelSIRCONN.rst b/docs/_autosummary/generated/epiworldpy.ModelSIRCONN.rst
@@ -0,0 +1,32 @@
+epiworldpy.ModelSIRCONN
+=======================
+
+.. currentmodule:: epiworldpy
+
+.. autoclass:: ModelSIRCONN
+
+
+   .. automethod:: __init__
+
+
+   .. rubric:: Methods
+
+   .. autosummary::
+
+      ~ModelSIRCONN.__init__
+      ~ModelSIRCONN.add_state
+      ~ModelSIRCONN.add_tool
+      ~ModelSIRCONN.add_virus
+      ~ModelSIRCONN.agents_from_edgelist
+      ~ModelSIRCONN.agents_smallworld
+      ~ModelSIRCONN.get_db
+      ~ModelSIRCONN.get_name
+      ~ModelSIRCONN.get_states
+      ~ModelSIRCONN.print
+      ~ModelSIRCONN.run
+
+
+
+
+
+
diff --git a/docs/_autosummary/generated/epiworldpy.ModelSIRD.rst b/docs/_autosummary/generated/epiworldpy.ModelSIRD.rst
@@ -0,0 +1,32 @@
+epiworldpy.ModelSIRD
+====================
+
+.. currentmodule:: epiworldpy
+
+.. autoclass:: ModelSIRD
+
+
+   .. automethod:: __init__
+
+
+   .. rubric:: Methods
+
+   .. autosummary::
+
+      ~ModelSIRD.__init__
+      ~ModelSIRD.add_state
+      ~ModelSIRD.add_tool
+      ~ModelSIRD.add_virus
+      ~ModelSIRD.agents_from_edgelist
+      ~ModelSIRD.agents_smallworld
+      ~ModelSIRD.get_db
+      ~ModelSIRD.get_name
+      ~ModelSIRD.get_states
+      ~ModelSIRD.print
+      ~ModelSIRD.run
+
+
+
+
+
+
diff --git a/docs/_autosummary/generated/epiworldpy.ModelSIRDCONN.rst b/docs/_autosummary/generated/epiworldpy.ModelSIRDCONN.rst
@@ -0,0 +1,32 @@
+epiworldpy.ModelSIRDCONN
+========================
+
+.. currentmodule:: epiworldpy
+
+.. autoclass:: ModelSIRDCONN
+
+
+   .. automethod:: __init__
+
+
+   .. rubric:: Methods
+
+   .. autosummary::
+
+      ~ModelSIRDCONN.__init__
+      ~ModelSIRDCONN.add_state
+      ~ModelSIRDCONN.add_tool
+      ~ModelSIRDCONN.add_virus
+      ~ModelSIRDCONN.agents_from_edgelist
+      ~ModelSIRDCONN.agents_smallworld
+      ~ModelSIRDCONN.get_db
+      ~ModelSIRDCONN.get_name
+      ~ModelSIRDCONN.get_states
+      ~ModelSIRDCONN.print
+      ~ModelSIRDCONN.run
+
+
+
+
+
+
diff --git a/docs/_autosummary/generated/epiworldpy.ModelSIS.rst b/docs/_autosummary/generated/epiworldpy.ModelSIS.rst
@@ -0,0 +1,32 @@
+epiworldpy.ModelSIS
+===================
+
+.. currentmodule:: epiworldpy
+
+.. autoclass:: ModelSIS
+
+
+   .. automethod:: __init__
+
+
+   .. rubric:: Methods
+
+   .. autosummary::
+
+      ~ModelSIS.__init__
+      ~ModelSIS.add_state
+      ~ModelSIS.add_tool
+      ~ModelSIS.add_virus
+      ~ModelSIS.agents_from_edgelist
+      ~ModelSIS.agents_smallworld
+      ~ModelSIS.get_db
+      ~ModelSIS.get_name
+      ~ModelSIS.get_states
+      ~ModelSIS.print
+      ~ModelSIS.run
+
+
+
+
+
+
diff --git a/docs/_autosummary/generated/epiworldpy.ModelSISD.rst b/docs/_autosummary/generated/epiworldpy.ModelSISD.rst
@@ -0,0 +1,32 @@
+epiworldpy.ModelSISD
+====================
+
+.. currentmodule:: epiworldpy
+
+.. autoclass:: ModelSISD
+
+
+   .. automethod:: __init__
+
+
+   .. rubric:: Methods
+
+   .. autosummary::
+
+      ~ModelSISD.__init__
+      ~ModelSISD.add_state
+      ~ModelSISD.add_tool
+      ~ModelSISD.add_virus
+      ~ModelSISD.agents_from_edgelist
+      ~ModelSISD.agents_smallworld
+      ~ModelSISD.get_db
+      ~ModelSISD.get_name
+      ~ModelSISD.get_states
+      ~ModelSISD.print
+      ~ModelSISD.run
+
+
+
+
+
+