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SequenceTools

Programs used in the lab for various tasks

getRBH.pl program for obtaining reciprocal best hits (RBH) using either of blastp, mmseqs, diamond, or lastal

calcANI.pl program for obtaining average nucleotide identity (ANI) by several methods.

getdNdS.pl program to obtain non-synonymous to synonymous substitutions with codeml (paml)

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