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Update VPOT.py
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add comment about new version (3) for phased genotype
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eipVCCRI authored Oct 27, 2021
1 parent 7b6a00f commit bbff086
Showing 1 changed file with 3 additions and 1 deletion.
4 changes: 3 additions & 1 deletion VPOT.py
Original file line number Diff line number Diff line change
@@ -1,4 +1,6 @@
###########################################################################################################
# VPOT - version 3 - 07/09/2021
# - added code to handle phased genotypes
# VPOT - version 2 - 07/01/2021
# - added code to handle multiple values in PD and VT fields in TXT file input, when transcript level predictor values are available
# - added code for a utility to convert VEP annotated VCF into standard format VCF which can be used by VPOT
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Maxcoverage=0 # read coverage of sample must be equal or greater then this to included
Non_alt_GT_types = ["0","."] #
# for main VPOT prioritisation option 1
info_opt0_msg1=["#VPOT version 2 - 07/01/2021 ",
info_opt0_msg1=["#VPOT version 3 - 07/09/2021 ",
"#tools=$1 # which tool to use - ",
"# 1: priority - priority tool ",
"# 2: genef - gene filter ",
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