Skip to content

Commit

Permalink
deploy: a8886c5
Browse files Browse the repository at this point in the history
  • Loading branch information
amrit110 committed Oct 6, 2023
1 parent 86d2f16 commit 0018a90
Show file tree
Hide file tree
Showing 40 changed files with 2,449 additions and 2,603 deletions.
8 changes: 4 additions & 4 deletions 404.html
Original file line number Diff line number Diff line change
Expand Up @@ -5,13 +5,13 @@
<meta name="generator" content="Docusaurus v2.2.0">
<title data-rh="true">Page Not Found | CyclOps</title><meta data-rh="true" name="viewport" content="width=device-width,initial-scale=1"><meta data-rh="true" name="twitter:card" content="summary_large_image"><meta data-rh="true" property="og:url" content="https://vectorinstitute.github.io/cyclops/404.html"><meta data-rh="true" name="docusaurus_locale" content="en"><meta data-rh="true" name="docusaurus_tag" content="default"><meta data-rh="true" name="docsearch:language" content="en"><meta data-rh="true" name="docsearch:docusaurus_tag" content="default"><meta data-rh="true" property="og:title" content="Page Not Found | CyclOps"><link data-rh="true" rel="icon" href="/cyclops/img/favicon.ico"><link data-rh="true" rel="canonical" href="https://vectorinstitute.github.io/cyclops/404.html"><link data-rh="true" rel="alternate" href="https://vectorinstitute.github.io/cyclops/404.html" hreflang="en"><link data-rh="true" rel="alternate" href="https://vectorinstitute.github.io/cyclops/404.html" hreflang="x-default"><link rel="alternate" type="application/rss+xml" href="/cyclops/blog/rss.xml" title="CyclOps RSS Feed">
<link rel="alternate" type="application/atom+xml" href="/cyclops/blog/atom.xml" title="CyclOps Atom Feed"><link rel="stylesheet" href="/cyclops/assets/css/styles.26dc1a25.css">
<link rel="preload" href="/cyclops/assets/js/runtime~main.c2b34449.js" as="script">
<link rel="preload" href="/cyclops/assets/js/main.fa1caf66.js" as="script">
<link rel="preload" href="/cyclops/assets/js/runtime~main.b8dcc3e6.js" as="script">
<link rel="preload" href="/cyclops/assets/js/main.d39f8eb6.js" as="script">
</head>
<body class="navigation-with-keyboard">
<script>!function(){function t(t){document.documentElement.setAttribute("data-theme",t)}var e=function(){var t=null;try{t=localStorage.getItem("theme")}catch(t){}return t}();t(null!==e?e:"light")}()</script><div id="__docusaurus">
<div role="region" aria-label="Skip to main content"><a class="skipToContent_fXgn" href="#docusaurus_skipToContent_fallback">Skip to main content</a></div><nav class="navbar navbar--fixed-top"><div class="navbar__inner"><div class="navbar__items"><button aria-label="Toggle navigation bar" aria-expanded="false" class="navbar__toggle clean-btn" type="button"><svg width="30" height="30" viewBox="0 0 30 30" aria-hidden="true"><path stroke="currentColor" stroke-linecap="round" stroke-miterlimit="10" stroke-width="2" d="M4 7h22M4 15h22M4 23h22"></path></svg></button><a class="navbar__brand" href="/cyclops/"><div class="navbar__logo"><img src="/cyclops/img/cyclops_logo-dark.png" alt="CyclOps Logo" class="themedImage_ToTc themedImage--light_HNdA"><img src="/cyclops/img/cyclops_logo-dark.png" alt="CyclOps Logo" class="themedImage_ToTc themedImage--dark_i4oU"></div><b class="navbar__title text--truncate"></b></a><a href="https://vectorinstitute.github.io/cyclops/api" target="_self" rel="noopener noreferrer" class="navbar__item navbar__link">API</a><a href="https://vectorinstitute.github.io/cyclops/api/tutorials" target="_self" rel="noopener noreferrer" class="navbar__item navbar__link">Tutorial</a></div><div class="navbar__items navbar__items--right"><a href="https://github.com/VectorInstitute/cyclops" target="_blank" rel="noopener noreferrer" class="navbar__item navbar__link">GitHub<svg width="13.5" height="13.5" aria-hidden="true" viewBox="0 0 24 24" class="iconExternalLink_nPIU"><path fill="currentColor" d="M21 13v10h-21v-19h12v2h-10v15h17v-8h2zm3-12h-10.988l4.035 4-6.977 7.07 2.828 2.828 6.977-7.07 4.125 4.172v-11z"></path></svg></a><div class="searchBox_ZlJk"></div></div></div><div role="presentation" class="navbar-sidebar__backdrop"></div></nav><div id="docusaurus_skipToContent_fallback" class="main-wrapper mainWrapper_z2l0"><main class="container margin-vert--xl"><div class="row"><div class="col col--6 col--offset-3"><h1 class="hero__title">Page Not Found</h1><p>We could not find what you were looking for.</p><p>Please contact the owner of the site that linked you to the original URL and let them know their link is broken.</p></div></div></main></div><footer class="footer footer--dark"><div class="container container-fluid"><div class="row footer__links"><div class="col footer__col"><div class="footer__title">Docs</div><ul class="footer__items clean-list"><li class="footer__item"><a href="https://vectorinstitute.github.io/cyclops/api" target="_self" rel="noopener noreferrer" class="footer__link-item">API</a></li><li class="footer__item"><a href="https://vectorinstitute.github.io/cyclops/api/tutorials" target="_self" rel="noopener noreferrer" class="footer__link-item">Tutorial</a></li></ul></div><div class="col footer__col"><div class="footer__title">More</div><ul class="footer__items clean-list"><li class="footer__item"><a class="footer__link-item" href="/cyclops/blog">Blog</a></li><li class="footer__item"><a href="https://github.com/VectorInstitute/cyclops" target="_blank" rel="noopener noreferrer" class="footer__link-item">GitHub<svg width="13.5" height="13.5" aria-hidden="true" viewBox="0 0 24 24" class="iconExternalLink_nPIU"><path fill="currentColor" d="M21 13v10h-21v-19h12v2h-10v15h17v-8h2zm3-12h-10.988l4.035 4-6.977 7.07 2.828 2.828 6.977-7.07 4.125 4.172v-11z"></path></svg></a></li></ul></div></div><div class="footer__bottom text--center"><div class="footer__copyright">Copyright © 2023 CyclOps, built by AI Engineering @ Vector Institute</div></div></div></footer></div>
<script src="/cyclops/assets/js/runtime~main.c2b34449.js"></script>
<script src="/cyclops/assets/js/main.fa1caf66.js"></script>
<script src="/cyclops/assets/js/runtime~main.b8dcc3e6.js"></script>
<script src="/cyclops/assets/js/main.d39f8eb6.js"></script>
</body>
</html>
Binary file modified api/_images/tutorials_nihcxr_monitor_api_10_1.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file modified api/_images/tutorials_nihcxr_monitor_api_12_0.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file modified api/_images/tutorials_nihcxr_monitor_api_6_0.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file modified api/_images/tutorials_nihcxr_monitor_api_8_0.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
2 changes: 1 addition & 1 deletion api/searchindex.js

Large diffs are not rendered by default.

20 changes: 10 additions & 10 deletions api/tutorials/eicu/query_api.html
Original file line number Diff line number Diff line change
Expand Up @@ -483,9 +483,9 @@ <h2>Imports and instantiate <code class="docutils literal notranslate"><span cla
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
/home/amritk/.cache/pypoetry/virtualenvs/pycyclops-wIzUAwxh-py3.9/lib/python3.9/site-packages/tqdm/auto.py:21: TqdmWarning: IProgress not found. Please update jupyter and ipywidgets. See https://ipywidgets.readthedocs.io/en/stable/user_install.html
/home/amritk/.cache/pypoetry/virtualenvs/pycyclops-mhx6UJW0-py3.9/lib/python3.9/site-packages/tqdm/auto.py:21: TqdmWarning: IProgress not found. Please update jupyter and ipywidgets. See https://ipywidgets.readthedocs.io/en/stable/user_install.html
from .autonotebook import tqdm as notebook_tqdm
2023-10-06 10:16:23,020 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cyclops.query.orm - Database setup, ready to run queries!
2023-10-06 10:23:42,944 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cyclops.query.orm - Database setup, ready to run queries!
</pre></div></div>
</div>
<div class="nboutput nblast docutils container">
Expand Down Expand Up @@ -549,8 +549,8 @@ <h2>Example 1. Get all female patients discharged in 2014 (limit to 100 rows).<a
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2023-10-06 10:16:23,822 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cyclops.query.orm - Query returned successfully!
2023-10-06 10:16:23,823 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cyclops.utils.profile - Finished executing function run_query in 0.050423 s
2023-10-06 10:23:43,780 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cyclops.query.orm - Query returned successfully!
2023-10-06 10:23:43,781 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cyclops.utils.profile - Finished executing function run_query in 0.041649 s
</pre></div></div>
</div>
<div class="nboutput nblast docutils container">
Expand Down Expand Up @@ -585,8 +585,8 @@ <h2>Example 2. Get all patient encounters with diagnoses (<code class="docutils
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2023-10-06 10:16:23,905 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cyclops.query.orm - Query returned successfully!
2023-10-06 10:16:23,907 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cyclops.utils.profile - Finished executing function run_query in 0.066299 s
2023-10-06 10:23:43,892 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cyclops.query.orm - Query returned successfully!
2023-10-06 10:23:43,893 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cyclops.utils.profile - Finished executing function run_query in 0.087835 s
</pre></div></div>
</div>
<div class="nboutput nblast docutils container">
Expand Down Expand Up @@ -627,8 +627,8 @@ <h2>Example 3. Get potassium lab tests for patients discharged in the year 2014,
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2023-10-06 10:16:23,971 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cyclops.query.orm - Query returned successfully!
2023-10-06 10:16:23,973 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cyclops.utils.profile - Finished executing function run_query in 0.034082 s
2023-10-06 10:23:43,970 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cyclops.query.orm - Query returned successfully!
2023-10-06 10:23:43,971 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cyclops.utils.profile - Finished executing function run_query in 0.046826 s
</pre></div></div>
</div>
<div class="nboutput nblast docutils container">
Expand Down Expand Up @@ -667,8 +667,8 @@ <h2>Example 4. Get glucose medications (substring search) for female patients di
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2023-10-06 10:16:24,161 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cyclops.query.orm - Query returned successfully!
2023-10-06 10:16:24,163 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cyclops.utils.profile - Finished executing function run_query in 0.164061 s
2023-10-06 10:23:44,173 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cyclops.query.orm - Query returned successfully!
2023-10-06 10:23:44,176 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cyclops.utils.profile - Finished executing function run_query in 0.180937 s
</pre></div></div>
</div>
<div class="nboutput nblast docutils container">
Expand Down
60 changes: 30 additions & 30 deletions api/tutorials/eicu/query_api.ipynb
Original file line number Diff line number Diff line change
Expand Up @@ -35,10 +35,10 @@
"id": "75a140e0-fb27-4319-862f-be54397abe5c",
"metadata": {
"execution": {
"iopub.execute_input": "2023-10-06T14:16:20.666173Z",
"iopub.status.busy": "2023-10-06T14:16:20.665581Z",
"iopub.status.idle": "2023-10-06T14:16:23.756281Z",
"shell.execute_reply": "2023-10-06T14:16:23.755177Z"
"iopub.execute_input": "2023-10-06T14:23:40.804046Z",
"iopub.status.busy": "2023-10-06T14:23:40.803373Z",
"iopub.status.idle": "2023-10-06T14:23:43.719872Z",
"shell.execute_reply": "2023-10-06T14:23:43.718461Z"
},
"tags": []
},
Expand All @@ -47,15 +47,15 @@
"name": "stderr",
"output_type": "stream",
"text": [
"/home/amritk/.cache/pypoetry/virtualenvs/pycyclops-wIzUAwxh-py3.9/lib/python3.9/site-packages/tqdm/auto.py:21: TqdmWarning: IProgress not found. Please update jupyter and ipywidgets. See https://ipywidgets.readthedocs.io/en/stable/user_install.html\n",
"/home/amritk/.cache/pypoetry/virtualenvs/pycyclops-mhx6UJW0-py3.9/lib/python3.9/site-packages/tqdm/auto.py:21: TqdmWarning: IProgress not found. Please update jupyter and ipywidgets. See https://ipywidgets.readthedocs.io/en/stable/user_install.html\n",
" from .autonotebook import tqdm as notebook_tqdm\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2023-10-06 10:16:23,020 \u001b[1;37mINFO\u001b[0m cyclops.query.orm - Database setup, ready to run queries!\n"
"2023-10-06 10:23:42,944 \u001b[1;37mINFO\u001b[0m cyclops.query.orm - Database setup, ready to run queries!\n"
]
},
{
Expand Down Expand Up @@ -132,10 +132,10 @@
"id": "c1efa964-8978-4a0e-9892-5ea4ce9953a3",
"metadata": {
"execution": {
"iopub.execute_input": "2023-10-06T14:16:23.762086Z",
"iopub.status.busy": "2023-10-06T14:16:23.761430Z",
"iopub.status.idle": "2023-10-06T14:16:23.828348Z",
"shell.execute_reply": "2023-10-06T14:16:23.827671Z"
"iopub.execute_input": "2023-10-06T14:23:43.727188Z",
"iopub.status.busy": "2023-10-06T14:23:43.726207Z",
"iopub.status.idle": "2023-10-06T14:23:43.784860Z",
"shell.execute_reply": "2023-10-06T14:23:43.784069Z"
},
"tags": []
},
Expand All @@ -144,14 +144,14 @@
"name": "stderr",
"output_type": "stream",
"text": [
"2023-10-06 10:16:23,822 \u001b[1;37mINFO\u001b[0m cyclops.query.orm - Query returned successfully!\n"
"2023-10-06 10:23:43,780 \u001b[1;37mINFO\u001b[0m cyclops.query.orm - Query returned successfully!\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2023-10-06 10:16:23,823 \u001b[1;37mINFO\u001b[0m cyclops.utils.profile - Finished executing function run_query in 0.050423 s\n"
"2023-10-06 10:23:43,781 \u001b[1;37mINFO\u001b[0m cyclops.utils.profile - Finished executing function run_query in 0.041649 s\n"
]
},
{
Expand Down Expand Up @@ -188,10 +188,10 @@
"id": "a7ab5fa3-e26b-47a7-818f-1bf367a55760",
"metadata": {
"execution": {
"iopub.execute_input": "2023-10-06T14:16:23.834160Z",
"iopub.status.busy": "2023-10-06T14:16:23.833975Z",
"iopub.status.idle": "2023-10-06T14:16:23.912027Z",
"shell.execute_reply": "2023-10-06T14:16:23.910885Z"
"iopub.execute_input": "2023-10-06T14:23:43.793534Z",
"iopub.status.busy": "2023-10-06T14:23:43.792964Z",
"iopub.status.idle": "2023-10-06T14:23:43.899368Z",
"shell.execute_reply": "2023-10-06T14:23:43.897842Z"
},
"tags": []
},
Expand All @@ -200,14 +200,14 @@
"name": "stderr",
"output_type": "stream",
"text": [
"2023-10-06 10:16:23,905 \u001b[1;37mINFO\u001b[0m cyclops.query.orm - Query returned successfully!\n"
"2023-10-06 10:23:43,892 \u001b[1;37mINFO\u001b[0m cyclops.query.orm - Query returned successfully!\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2023-10-06 10:16:23,907 \u001b[1;37mINFO\u001b[0m cyclops.utils.profile - Finished executing function run_query in 0.066299 s\n"
"2023-10-06 10:23:43,893 \u001b[1;37mINFO\u001b[0m cyclops.utils.profile - Finished executing function run_query in 0.087835 s\n"
]
},
{
Expand Down Expand Up @@ -244,10 +244,10 @@
"id": "24043abc-1878-4e00-8229-36d4a0368b98",
"metadata": {
"execution": {
"iopub.execute_input": "2023-10-06T14:16:23.918853Z",
"iopub.status.busy": "2023-10-06T14:16:23.918163Z",
"iopub.status.idle": "2023-10-06T14:16:23.976962Z",
"shell.execute_reply": "2023-10-06T14:16:23.976263Z"
"iopub.execute_input": "2023-10-06T14:23:43.905046Z",
"iopub.status.busy": "2023-10-06T14:23:43.904296Z",
"iopub.status.idle": "2023-10-06T14:23:43.976193Z",
"shell.execute_reply": "2023-10-06T14:23:43.974990Z"
},
"tags": []
},
Expand All @@ -256,14 +256,14 @@
"name": "stderr",
"output_type": "stream",
"text": [
"2023-10-06 10:16:23,971 \u001b[1;37mINFO\u001b[0m cyclops.query.orm - Query returned successfully!\n"
"2023-10-06 10:23:43,970 \u001b[1;37mINFO\u001b[0m cyclops.query.orm - Query returned successfully!\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2023-10-06 10:16:23,973 \u001b[1;37mINFO\u001b[0m cyclops.utils.profile - Finished executing function run_query in 0.034082 s\n"
"2023-10-06 10:23:43,971 \u001b[1;37mINFO\u001b[0m cyclops.utils.profile - Finished executing function run_query in 0.046826 s\n"
]
},
{
Expand Down Expand Up @@ -306,10 +306,10 @@
"id": "f6142f27-e8d1-453c-bfe2-2265d9ff1914",
"metadata": {
"execution": {
"iopub.execute_input": "2023-10-06T14:16:23.984118Z",
"iopub.status.busy": "2023-10-06T14:16:23.983547Z",
"iopub.status.idle": "2023-10-06T14:16:24.169122Z",
"shell.execute_reply": "2023-10-06T14:16:24.167481Z"
"iopub.execute_input": "2023-10-06T14:23:43.983464Z",
"iopub.status.busy": "2023-10-06T14:23:43.982577Z",
"iopub.status.idle": "2023-10-06T14:23:44.181193Z",
"shell.execute_reply": "2023-10-06T14:23:44.180058Z"
},
"tags": []
},
Expand All @@ -318,14 +318,14 @@
"name": "stderr",
"output_type": "stream",
"text": [
"2023-10-06 10:16:24,161 \u001b[1;37mINFO\u001b[0m cyclops.query.orm - Query returned successfully!\n"
"2023-10-06 10:23:44,173 \u001b[1;37mINFO\u001b[0m cyclops.query.orm - Query returned successfully!\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2023-10-06 10:16:24,163 \u001b[1;37mINFO\u001b[0m cyclops.utils.profile - Finished executing function run_query in 0.164061 s\n"
"2023-10-06 10:23:44,176 \u001b[1;37mINFO\u001b[0m cyclops.utils.profile - Finished executing function run_query in 0.180937 s\n"
]
},
{
Expand Down
Loading

0 comments on commit 0018a90

Please sign in to comment.